Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01458 ATGGCTTTGTTCAAGGATAATGATGACTTTCACATGATCTCCTCATTCCTTAAAACAATACTCACCTTCTCCTCCTTCTTATTGATCACTTTGCCAACATCCATTTGCCAAGAACATAACAAAAACGTAGAGTGCGGCAAGCCATACACATGCGGAGACATATCCAACATCTATTATCCTTTTTGGGGAGAGAACAGACCCAGTTACTGTGGCAACAACAAGCAATTCGAGCTCAAGTGTGAGGGTCATCGAAACACTTCCATTCAAATTGGATCACAAAGTTTCCATGTGCTGCGTATTGATCTACTGGGTTACACCATGACATTGGTTCGAAAAGGCCTTGTTTATGATCATTGTTCTTCGGGTTTGACCAACACTTCTTTAAACTCAAGTCTCTTTAGTTACATGCCAAATGTAAGGAACATCACCATCTTCTATGACTGCCCTGATATTAGGCTTTCAAATGGCACAAACTCTTTTCAGTGCCAAGAAGGTGGGAACAAGCGTGCTTTCTATGCGGATCGTGCAACTAAAGAGGTCCAAAACTGCAAAGGAGTTAGCATTGAAGTGCAGGTAACACAGGAACATGAGCCTGATGGTGGTGGAATTGAAGGACTGAACAAATCCTTGAGTGCTGGTTTTGATGTGAAATATGTTTCAGACTATCAAGTATGTTTGAGATGCGTTTTAAGTAATGGAACCTGCGGGGCCAATGATAAGTCTCAGTTTACCTGCTATTGCCAGGATGGAACTAATGCTTTGGATTGCTATCATAATCAAAGCAATCAGTGGAATTGGAAAAGGAAGGTCGGTATAGGTGTTGCTGCTGCTGCTGTGGTCAGTGCAGTTGCAGTAGGCATTGCCTTTTACATCTATTATTACCAAAAGAAGAAGAAGAATCTTCACGCAAAGTCCTCTGTACTATTTCAGAGCTTCTCTTCTTGTCCATCTTTAGAAGACATGGAGAAGGGACGTAAATACCTTGGACTCGACTTCTTCACCTATAGTGAACTCGAAGAGGCCACAAACTACTTTGATTCAGCCAAAAGACTAGGAGATGGAGGCTTTGGGACAGTGTACTATGGCAAACTTCGGGATGGGCGTGTTGTTGCAGTGAAAAGGATGTCTGAGAACAGTTACAAGAGAGTAGAGCAATTCATGAATGAAGTTGAGATATTAACTGGCTTACACCACCAAAATCTTGTGTCATTATATGGATGCACTTCTCGCCACAGTCGTGAACTTCTGCTTGTGTATGAATATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTAAGCTTGCAAAACCTGGCACACTGTCATGGCATATCAGAATGAATATTGCCATAGGAACTGCAAGTGCATTGGTATATCTTCATGCTACTGACATCATCCATAGAGATGTGAAAACCAACAACATTCTCCTTGACAATCACTTTGGTGTCAAAGTAGCAGATTTTGGACTTTCACGTCTTTTACCAAACCATGTAACTCACATTTCAACAGCTCCACAAGGGACTCCTGGTTATGTAGATCCTGAATACCATGAATACTACCAGCTTACTGACAAAAGTGATGTTTATAGCTTTGGAGTTGTGCTGATTGAGCTAATATCATCCATGCCTGCTGTTGATATCACAAGGCATAGGCAAGAAATCAATTTGTCTAACATGGCCATTAAAAAGATTAAAAATGGGACATTACATGAGCTTGTGGACCCAACTCTTGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATTAATGCTGTGGCAGAGTTAGCATTTCAGTGCTTGCAGAGTTCTAAAGATGTGAGACCTTGTATGGTAGAAGTGCTGGATAGGCTGAAGGATATACAGAGTGATGGAAAATATAAAAGCAAACCTGAGGTGATGGATATCTCAGAAGATGATGCTGCTTTGATGAGGAATGAGCCACCACTATCACCAGATTCAAATTTGGGGAGCATATCTACTCCACCAAATGGAAGCTAA 1998 0.4124 MALFKDNDDFHMISSFLKTILTFSSFLLITLPTSICQEHNKNVECGKPYTCGDISNIYYPFWGENRPSYCGNNKQFELKCEGHRNTSIQIGSQSFHVLRIDLLGYTMTLVRKGLVYDHCSSGLTNTSLNSSLFSYMPNVRNITIFYDCPDIRLSNGTNSFQCQEGGNKRAFYADRATKEVQNCKGVSIEVQVTQEHEPDGGGIEGLNKSLSAGFDVKYVSDYQVCLRCVLSNGTCGANDKSQFTCYCQDGTNALDCYHNQSNQWNWKRKVGIGVAAAAVVSAVAVGIAFYIYYYQKKKKNLHAKSSVLFQSFSSCPSLEDMEKGRKYLGLDFFTYSELEEATNYFDSAKRLGDGGFGTVYYGKLRDGRVVAVKRMSENSYKRVEQFMNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKLAKPGTLSWHIRMNIAIGTASALVYLHATDIIHRDVKTNNILLDNHFGVKVADFGLSRLLPNHVTHISTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMPAVDITRHRQEINLSNMAIKKIKNGTLHELVDPTLGFESDFKVRKMINAVAELAFQCLQSSKDVRPCMVEVLDRLKDIQSDGKYKSKPEVMDISEDDAALMRNEPPLSPDSNLGSISTPPNGS* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01458 665 MobiDBLite consensus disorder prediction 650 665 - -
Rops2g01458 665 SMART serkin_6 345 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01458 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 654 IPR044652 GO:0004672
Rops2g01458 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Rops2g01458 665 SUPERFAMILY Protein kinase-like (PK-like) 327 617 IPR011009 -
Rops2g01458 665 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01458 665 Gene3D Transferase(Phosphotransferase) domain 1 422 641 - -
Rops2g01458 665 MobiDBLite consensus disorder prediction 625 665 - -
Rops2g01458 665 Pfam Wall-associated receptor kinase C-terminal 174 250 IPR032872 -
Rops2g01458 665 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Rops2g01458 665 Gene3D Phosphorylase Kinase; domain 1 318 421 - -
Rops2g01458 665 Pfam Protein kinase domain 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01458 665 FunFam Wall-associated receptor kinase-like 20 422 630 - -
Rops2g01458 665 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 322 421 - -
Rops2g01458 665 MobiDBLite consensus disorder prediction 625 641 - -
Rops2g01458 665 Pfam Wall-associated receptor kinase galacturonan-binding 45 110 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01458 Rops-Chr2 21343422 21347238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01458 47 665 Receptor kinase-like Gene Family AT1G25390 43.307 5.80e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops2g01458 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01458 - - gmx:100794703 900.197