Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01443 ATGAAGAGGAAGCAAGAGGAAGTGAGTGGGATGGAAGGGAAAGGGGGAGCGAGTTCCAGTTGTGGTGGAAAATCAAGGGTTTGGGAAGATGATGGAGGCATGGATGAGCTTTTAGCGGTGGTGGGTTACAAGGTGAGGTCATCAGACATGGCGGAAGTGGCTCAGAAGCTTGAACAGCTTGAACAAGCCATGGGGAACTTCCAAGATGAAGAGGGCATAGCAGAACAGCTGTCATCAGATACAATCCACTACAACCCCTCTGATATCTCAAACTGGTTAGAAACCATGCTTTCTAATTTAGACCCTCAACCTTCTCCTTCTCTTTCTCACTCTTCAGACTACGATCTCAAAGCCATTCCAGGGAAAGCGATTTACGGAACCACCGAATCAACTCGGTCGGTTGTTATGGTCGACTCGCAGGACAACGGGATCCGGTTAGTTCACACACTCATGGCATGTGCAGAGGCCGTTGAGCAAAACAAACTGACAGTTGCGGATGCGCTAGTCAAACAGATCGGTTACCTAGCACTGTCACAGGAGGGTGTTATGAGGAAGGTAGCCACTTACTTCGCCGAGGGTCTTGCGCGGCGAATCTACGGCGTTTACCCTCAGCCGCAGCAGCAACAGCATTTTCTCTCTGATACCCTTCAGATCCATTTCTATGAAACCTGCCCTTACCTGAAATTTGCTCATTTCACTGCGAATCAAGCTATTCTAGAAGCTTTCCAAGGGAAGAGTCGTGTCCATGTCATCGATTTCGCTATTAACCAAGGCATGCAGTGGCCGGCGTTGATGCAGGCTCTCGCCTTACGCCCAGGTGGTCCACCGGCGTTTCGTCTCACAGGAATCGGACCTCCGGCACCGGATAACTCCGACCACCTCCAACAGGTTGGTTGGAAGCTCGCTCAGTTGGCTGAAACCATTCATGTTCAGTTTGAATACCGAGGCTTCGTTGCAAACAGCCTCGCCGATCTCGATGCTTCCATGCTTGAACTCCGTTCACCGGAAGCCGAAGCTGTTGCTGTCAACTCCGTCTTTGAACTCCACCGGCTCCTCGCTCGTCCCGGTGCGTTGGAGAAAGTTTTCTCCGTTATCCGGCAGATTCGGCCGGAGATTGTAACCGTCGTGGAACAAGAAGCTAACCACAACGGAACCAGTTTCCTCGACCGGTTCACTGAGTCTCTGCACTATTACTCCACTTTGTTTGACTCTGTAGAAGGTTCCTCAGTGGATCCACAGGATAAGGCCAGGTCGGAGGTTTATCTGGGGAAGCAAATCTGTAACGTGGTGGCGTGTGAGGGAATGGACCGTCTTGAACGTCACGAGACGCTGAACCAGTGGCGAACCCGGTTCAACTCGGCCGGGTTTTCTCCTGTTCACTTGGGATCCAACGCGTTTAAACAAGCCAGCATGTTGCTAGCGCTGTACGCCGGTGGGGATGGGTATAGGGTGGAGGAGAATAATGGGTGTCTCATGTTGGGTTGGCACACTAGGCCATTGATTGCCACCTCTGCTTGGAAACTCGCCACCAAATCGCTGGTTGCTCACTGA 1551 0.5177 MKRKQEEVSGMEGKGGASSSCGGKSRVWEDDGGMDELLAVVGYKVRSSDMAEVAQKLEQLEQAMGNFQDEEGIAEQLSSDTIHYNPSDISNWLETMLSNLDPQPSPSLSHSSDYDLKAIPGKAIYGTTESTRSVVMVDSQDNGIRLVHTLMACAEAVEQNKLTVADALVKQIGYLALSQEGVMRKVATYFAEGLARRIYGVYPQPQQQQHFLSDTLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLELRSPEAEAVAVNSVFELHRLLARPGALEKVFSVIRQIRPEIVTVVEQEANHNGTSFLDRFTESLHYYSTLFDSVEGSSVDPQDKARSEVYLGKQICNVVACEGMDRLERHETLNQWRTRFNSAGFSPVHLGSNAFKQASMLLALYAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLATKSLVAH* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01443 516 Pfam Transcriptional regulator DELLA protein N terminal 35 104 IPR021914 -
Rops2g01443 516 Gene3D - 33 100 IPR038088 -
Rops2g01443 516 SMART DELLA_2 35 110 - -
Rops2g01443 516 MobiDBLite consensus disorder prediction 1 29 - -
Rops2g01443 516 Pfam GRAS domain family 146 507 IPR005202 -
Rops2g01443 516 ProSiteProfiles GRAS family profile. 137 507 IPR005202 -
Rops2g01443 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 503 IPR005202 -
Rops2g01443 516 Coils Coil 50 70 - -
Rops2g01443 516 FunFam DELLA protein GAI 33 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01443 Rops-Chr2 21132088 21134118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01443 29 510 GRAS Transcription Factor Family AT2G01570 65.823 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops2g01443 GRAS 1.4e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01443 K14494 - gmx:547718 811.216