Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01428 ATGGAGGAGGATGAGATTCAGGCACAGGCATTTAAATTTCCAAGAGTTGGAAATGGGAGAAATGAGTCTAACAAGATAGGTCCTAGAGGAGGGAATGAGGAAGAAAATGGAGAGCTGAAAAGAAGAGGTGGAGGGGGCAGTGATGTGAGCACAAACAGGTTGCATAGTTGGCATCACTCTTCTAGAATCATAAGGGTGTCTAGAGCATCTGGTGGGAAAGATAGGCACAGCAAGGTCATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTTTCTGTGACCACAGCTATTCAGTTCTATGATCTTCAAGATCGCTTGGGTTATGACCAACCTAGTAAAGCTGTGGAGTGGTTAATCAAATCAGCTGCAGATGCCATTGCAGAACTACCTTCCCTTCCTGATACCCCAAAGCAACCAAGTGATGAGAAAAGGGCAAGTGAGCAAGGGTTTGATTCAGCTGATGCAGAGATAGAAGGTGAGATCAACTATCAACAAAACCAAAACCAAAGCCAGAACCTTTCTTTGTCCAAATCTGCTTGTAGCAGCACTTCAGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGCCTGACATTCGTGTGAACCGTGTCAAGGCTAGAGAAAGAGCAAGGGAAAGAGCAGCAAAGGAGAAGGAGAAGGAGAAGGAGAATGAATCATCTCACATTGCTCATCACCACCAACACCACATTGTGAACTCCATTTCTCAAACAGCTTCTTTCACTGAACTACTCACTGGTGGGATAAGCAATTCAGTTCCCACCACAACAAGTCCAAGAGGGTCAGTTCATCAGAATCATGGTAATGATGAGCCTAATCTGTTCAACAAAGCACCACCCATGGACTATTTCAGCTCAGGGCTGCTGGGACCTTCCTCTTCTAGAACCCATCATCATTCTTCTTCTTCTTCTGGGTTCTCAGTATCACAAATCCAATTGGGACATTCGCTTCCTGAGGCTATGTCATTCAGTGAAAACCACTCGTCAGATCAGCTGCAACATTTCTCTTTCATCCCTGATCATCTCATGCCACCACCACCTGTGGTTACTTCTTCTCAACCCAGCGGGAACGACTACAATCTCAACTTCACAATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTTTTGCCTCATCTCCAGAGGTTTTCACCTTTAGACGGATCCGCTGTACCTTTCTGCATAGGAGCTGCTCCTCCTTCTGCTGCTCCTACCATTGAGAATAATAATAATAATCATCATCACCACCATCAGTTTTCTTCTGTCTTTGATGGTGGCCGCTTGCAGCTCTACTATGGTGATGGGTGCAGGCATTCAGATCAGAAGGGGAAAGCCAAAAACTGA 1389 0.4586 MEEDEIQAQAFKFPRVGNGRNESNKIGPRGGNEEENGELKRRGGGGSDVSTNRLHSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLPDTPKQPSDEKRASEQGFDSADAEIEGEINYQQNQNQSQNLSLSKSACSSTSETSKGSGLSLSRPDIRVNRVKARERARERAAKEKEKEKENESSHIAHHHQHHIVNSISQTASFTELLTGGISNSVPTTTSPRGSVHQNHGNDEPNLFNKAPPMDYFSSGLLGPSSSRTHHHSSSSSGFSVSQIQLGHSLPEAMSFSENHSSDQLQHFSFIPDHLMPPPPVVTSSQPSGNDYNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPLDGSAVPFCIGAAPPSAAPTIENNNNNHHHHHQFSSVFDGGRLQLYYGDGCRHSDQKGKAKN* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01428 462 ProSiteProfiles TCP domain profile. 72 130 IPR017887 -
Rops2g01428 462 MobiDBLite consensus disorder prediction 27 42 - -
Rops2g01428 462 MobiDBLite consensus disorder prediction 167 194 - -
Rops2g01428 462 MobiDBLite consensus disorder prediction 261 279 - -
Rops2g01428 462 MobiDBLite consensus disorder prediction 130 151 - -
Rops2g01428 462 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 385 IPR005333 GO:0003700
Rops2g01428 462 MobiDBLite consensus disorder prediction 167 234 - -
Rops2g01428 462 Coils Coil 205 226 - -
Rops2g01428 462 Pfam TCP family transcription factor 71 221 IPR017887 -
Rops2g01428 462 ProSiteProfiles R domain profile. 201 219 IPR017888 -
Rops2g01428 462 MobiDBLite consensus disorder prediction 261 286 - -
Rops2g01428 462 MobiDBLite consensus disorder prediction 1 57 - -
Rops2g01428 462 MobiDBLite consensus disorder prediction 201 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01428 Rops-Chr2 20736336 20745785 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01428 52 462 TCP Transcription Factor Family AT4G18390 45.413 1.28e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops2g01428 TCP 2.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01428 - - vvi:100249845 463.381