LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g01428	ATGGAGGAGGATGAGATTCAGGCACAGGCATTTAAATTTCCAAGAGTTGGAAATGGGAGAAATGAGTCTAACAAGATAGGTCCTAGAGGAGGGAATGAGGAAGAAAATGGAGAGCTGAAAAGAAGAGGTGGAGGGGGCAGTGATGTGAGCACAAACAGGTTGCATAGTTGGCATCACTCTTCTAGAATCATAAGGGTGTCTAGAGCATCTGGTGGGAAAGATAGGCACAGCAAGGTCATGACTTCAAAGGGTTTAAGAGACAGAAGGGTTAGGCTTTCTGTGACCACAGCTATTCAGTTCTATGATCTTCAAGATCGCTTGGGTTATGACCAACCTAGTAAAGCTGTGGAGTGGTTAATCAAATCAGCTGCAGATGCCATTGCAGAACTACCTTCCCTTCCTGATACCCCAAAGCAACCAAGTGATGAGAAAAGGGCAAGTGAGCAAGGGTTTGATTCAGCTGATGCAGAGATAGAAGGTGAGATCAACTATCAACAAAACCAAAACCAAAGCCAGAACCTTTCTTTGTCCAAATCTGCTTGTAGCAGCACTTCAGAGACAAGCAAAGGTTCTGGCTTGTCCCTCTCAAGGCCTGACATTCGTGTGAACCGTGTCAAGGCTAGAGAAAGAGCAAGGGAAAGAGCAGCAAAGGAGAAGGAGAAGGAGAAGGAGAATGAATCATCTCACATTGCTCATCACCACCAACACCACATTGTGAACTCCATTTCTCAAACAGCTTCTTTCACTGAACTACTCACTGGTGGGATAAGCAATTCAGTTCCCACCACAACAAGTCCAAGAGGGTCAGTTCATCAGAATCATGGTAATGATGAGCCTAATCTGTTCAACAAAGCACCACCCATGGACTATTTCAGCTCAGGGCTGCTGGGACCTTCCTCTTCTAGAACCCATCATCATTCTTCTTCTTCTTCTGGGTTCTCAGTATCACAAATCCAATTGGGACATTCGCTTCCTGAGGCTATGTCATTCAGTGAAAACCACTCGTCAGATCAGCTGCAACATTTCTCTTTCATCCCTGATCATCTCATGCCACCACCACCTGTGGTTACTTCTTCTCAACCCAGCGGGAACGACTACAATCTCAACTTCACAATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTCTTTTGCCTCATCTCCAGAGGTTTTCACCTTTAGACGGATCCGCTGTACCTTTCTGCATAGGAGCTGCTCCTCCTTCTGCTGCTCCTACCATTGAGAATAATAATAATAATCATCATCACCACCATCAGTTTTCTTCTGTCTTTGATGGTGGCCGCTTGCAGCTCTACTATGGTGATGGGTGCAGGCATTCAGATCAGAAGGGGAAAGCCAAAAACTGA	1389	0.4586	MEEDEIQAQAFKFPRVGNGRNESNKIGPRGGNEEENGELKRRGGGGSDVSTNRLHSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLPDTPKQPSDEKRASEQGFDSADAEIEGEINYQQNQNQSQNLSLSKSACSSTSETSKGSGLSLSRPDIRVNRVKARERARERAAKEKEKEKENESSHIAHHHQHHIVNSISQTASFTELLTGGISNSVPTTTSPRGSVHQNHGNDEPNLFNKAPPMDYFSSGLLGPSSSRTHHHSSSSSGFSVSQIQLGHSLPEAMSFSENHSSDQLQHFSFIPDHLMPPPPVVTSSQPSGNDYNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPLDGSAVPFCIGAAPPSAAPTIENNNNNHHHHHQFSSVFDGGRLQLYYGDGCRHSDQKGKAKN*	463

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g01428	462	ProSiteProfiles	TCP domain profile.	72	130	IPR017887	-
Rops2g01428	462	MobiDBLite	consensus disorder prediction	27	42	-	-
Rops2g01428	462	MobiDBLite	consensus disorder prediction	167	194	-	-
Rops2g01428	462	MobiDBLite	consensus disorder prediction	261	279	-	-
Rops2g01428	462	MobiDBLite	consensus disorder prediction	130	151	-	-
Rops2g01428	462	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	28	385	IPR005333	GO:0003700
Rops2g01428	462	MobiDBLite	consensus disorder prediction	167	234	-	-
Rops2g01428	462	Coils	Coil	205	226	-	-
Rops2g01428	462	Pfam	TCP family transcription factor	71	221	IPR017887	-
Rops2g01428	462	ProSiteProfiles	R domain profile.	201	219	IPR017888	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g01428	Rops-Chr2	20736336	20745785	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g01428	52	462	TCP Transcription Factor Family	AT4G18390	45.413	1.28e-85	265

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Rops2g01428		TCP	2.3e-41	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g01428	-		-	vvi:100249845	463.381

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