Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01421 ATGGCGCAGCTTCCCTGTGACGCTGATGGCCTCTATATGCTCTGCAAAAACAAGCCACCTCCCTCCGAGACTCTCCCTGGCACGTTCCGTGCCTTCCCCTCCCTCCAACCACCCTTCTTGATTGGGACTACCCTGTCCTCGTTGCCCAGCCTCTCACGGTGGTTCGCGCACTTACCAGCACCGACGGGGCTCGCGTTCTGGCGGTCAGAGCTTTCGTTCGATCAGATGCTCAAGCACAGCAATGATGGAGCGTGCCCTGGCAAAGGGTTCTACACTTACGATGCTTTCATTTCAAAGAACAAGGCTTTCTCCCGACTTTGGCAACACCGTGATACTGCCACTCGTAAGAGGGAGATTGCTGCTTTCTTCGGCCAAACTTCTCATGAAACTACCGGTTGGTTGGCTGAATTCACCCCAGAGGATATAGATACTCGGAAGCGGTTGCTTTATCGAAAGCTTGATTCAGATGAAGCTGCAGCGTTGCCTATGACCAAGCGAAGAAAAGGTGGTGAGCCACTTCCGGAGCAAAATGAGGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTGCAGAAATCTTTGACCTGGAGGAGAAGGAAGCACCAGGCACCCTGATGTGTAATCTAAAGCCTTATCAGATGCAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATGGATGTTGAAAGTGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAAGGGAAGGACAATTTATGTGAACATCTTCACGGGGGAAGCATCAAAGAAATTTCCAAAAGCAACACAGATGGCAAGAGGAGGAAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTATGGCAAGAATTGGAATAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCAAGAGCCCCGAAATTGGTCAAGGCCATTTTGAGGACACCGATGTTAAGAAGAACGAAGGAAACAAAGGATAAACAGGGAAGGTCTATACTTGTCCTGCCACCAACTGATATTCAATTGGTTGAGTGTGAGCAGTCAGAATCTGAACGGGACTTCTATGATACACTATGCCTGTTTACCTAA 1137 0.4811 MAQLPCDADGLYMLCKNKPPPSETLPGTFRAFPSLQPPFLIGTTLSSLPSLSRWFAHLPAPTGLAFWRSELSFDQMLKHSNDGACPGKGFYTYDAFISKNKAFSRLWQHRDTATRKREIAAFFGQTSHETTGWLAEFTPEDIDTRKRLLYRKLDSDEAAALPMTKRRKGGEPLPEQNEDEQALSESALNKLVGAAEIFDLEEKEAPGTLMCNLKPYQMQALYWMSEIEKGMDVESAERNLHPCWSAYNICKGRTIYVNIFTGEASKKFPKATQMARGGNSLEDLFSLLCFLRVEPWCNWAWYGKNWNKLVQRPYENGDPRAPKLVKAILRTPMLRRTKETKDKQGRSILVLPPTDIQLVECEQSESERDFYDTLCLFT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01421 378 Gene3D - 57 185 - -
Rops2g01421 378 Pfam Chitinase class I 72 135 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops2g01421 378 Pfam SNF2-related domain 279 374 IPR000330 GO:0005524|GO:0140658
Rops2g01421 378 MobiDBLite consensus disorder prediction 161 175 - -
Rops2g01421 378 MobiDBLite consensus disorder prediction 161 182 - -
Rops2g01421 378 SUPERFAMILY Lysozyme-like 65 136 IPR023346 -
Rops2g01421 378 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 279 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01421 Rops-Chr2 20461191 20464204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01421 279 374 RAD5 or RAD16-like Gene Family AT5G43530 72.917 5.79e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops2g01421 SNF2_N 3.5e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01421 K15505 - gmx:100806677 256.529