Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01418 ATGGCAGAAGAAAAGCATCGCAGCATACCGGTTTTGCCATGGATGCGAGACCCCATTGACGTCACTCTCTGTCCACAACTCCCTCTTGATTCCGTTCCTTGCCTCAACCCTAAGTTAAAGTTGGCGTTGGAGAACATGGGAATCTCGAATCTCTTCCCCGTTCAAGTCGCAGTTTGGCAAGAAACAGTTGGTCCTGGCAATTTCGATCGGGACATTTGCGTAAATTCACCCACCGGAAGCGGAAAAACCTTGGCCTACGCTCTCCCCATTGTTCAATTGCTTTCCACGCGCGTCACCAGATTCCTACGCGCCTTGGTCGTGGTTCCTACGCGCGACCTCGCCTTGCAGGTTAAACGAGTCTTCGACGCCGTTGCTTCACCACTCGGCTTGCGCGTTGGCTTGGCCGTTGGTCAATCTTCGGTTGCCGACGAGATTTCCGAGCTCGTTGAAATGCCCGCACGTGAGGTAGGCACGTGTTATGATGATCCACTAGACGTTTCGGTTCTTGTTCGGTTTCGAAGTAAGGTGGATATATTGGTGGCAACCCCTGGAAGGTTGATGGATCATATTAATACTACTAAAGGCTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGACTGCTTCGGGAAGATTACCAGTCCTGGCTGCCTACTGTGCTTGACTTGACCCAACCTAATGATGATCAATTTTTTCAACCAGCTGATTCTTTTTTCCCTTGTTCTCTTGGTGCATTAAGAACCAGAAGAAGACGTGGAGTTGAGAGGGGGTTCAAGGATAAGCCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCAACATTAACGCAGGATCCAGGCAAGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGGAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGATTTGTGAAACAAAGCTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGGAGAAAAATGCATAGTTTTTACAAAATCCGTGGAATCAACACATCGTCTCTGCAAATTGCTCAATTGTTTTGGAGATCTGCAAATCAATATTAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGAGATTGAATGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCGATGACTCGTGGAATGGATGTTGAAGGGGTAGGGAATGTCATTAATTATGACAAGCCCAAATACGTAAAGACATATGTTCATCGGGCTGGTAGGACCGCGAGAGCTGGCCATACTGGGCGTTGCTTCACATTGATGTCGAAAGATGAGGTTCGGCAATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGTCCCGAGCATATTATTCCATCAAATTTGATTGAAGCACTTCATACTACCTACCAATCAGCGCTGAAAAAATATAAGGAGATGATCATGGAGACACGAAAGAAACCCAAGGATTAG 1500 0.4573 MAEEKHRSIPVLPWMRDPIDVTLCPQLPLDSVPCLNPKLKLALENMGISNLFPVQVAVWQETVGPGNFDRDICVNSPTGSGKTLAYALPIVQLLSTRVTRFLRALVVVPTRDLALQVKRVFDAVASPLGLRVGLAVGQSSVADEISELVEMPAREVGTCYDDPLDVSVLVRFRSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREDYQSWLPTVLDLTQPNDDQFFQPADSFFPCSLGALRTRRRRGVERGFKDKPYPRLAKMVLSATLTQDPGKLVQLNLHHPLFLRAGEMRYRLPENLESYKLICETKLKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFGDLQINIKEYSGLQHQRVRSKRLNEFRKGEFQVLVSSDAMTRGMDVEGVGNVINYDKPKYVKTYVHRAGRTARAGHTGRCFTLMSKDEVRQFKKLMQKAEASSCPEHIIPSNLIEALHTTYQSALKKYKEMIMETRKKPKD* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01418 499 Gene3D - 309 499 IPR027417 -
Rops2g01418 499 SMART helicmild6 349 433 IPR001650 -
Rops2g01418 499 PANTHER RNA HELICASE 35 476 - -
Rops2g01418 499 SMART ultradead3 47 313 IPR014001 -
Rops2g01418 499 Gene3D - 26 300 IPR027417 -
Rops2g01418 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 297 IPR014001 -
Rops2g01418 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Rops2g01418 499 FunFam ATP-dependent RNA helicase DDX51 16 300 - -
Rops2g01418 499 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Rops2g01418 499 CDD DEADc_DDX51 39 297 - -
Rops2g01418 499 Pfam DEAD/DEAH box helicase 53 285 IPR011545 GO:0003676|GO:0005524
Rops2g01418 499 CDD SF2_C_DEAD 310 441 - -
Rops2g01418 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 455 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01418 Rops-Chr2 20382595 20394419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01418 57 455 Eukaryotic Initiation Factors Gene Family AT3G19760 22.906 1.08e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01418 K14807 - cit:102616133 712.22