Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01417 ATGGAGGATGACGGTGAGGAAGATAAGGATGAATTTGACATTCTGAAATGGTGGAAAGGCAAGACATCCAAGTATTATATTCTGTCTTATATGGCTAGGGATATATTGGCTATTCTGGTATCTACTGTATCATCTGAGTCTGCATTTAGTACCGGAGGTCGTGTTCTTGACCCGTACCATAGTTCATTGAATCCCATCACAGTTGAGGCTTTGGTTTGCACTCAAAATTGGTTGAGGCCTAGTAAAGTTATTGATGATTCACAAAGTCAGTCCAATGAAGTAGTAAGAGAAATTGAAAAAGATTTTTCATTGGAGAGAGAAAGAAAGGGGCAAGATGAGGGTGGCAAAGTCTCAGGTGTGGCAGCCATGCAAGAAGAAGAGGTTTTGACAGCTAGAGAGAGAAAGTCAAGGGGTTTAGAGAGAGAGAGAGAGAGAGAGCATCAAGAAGGAGAAAGGGAAGAGGAAAAAGTGGAGAAGATGCAGTCACGTGAGGGGTCTGGTGGTAGCAGCGGAAGCAAGATCCGTGTAGGAAAATATGAGCTGGGTCGGACCCTTGGTAAGGGAAACTTTGCCAAGGTCAAGTTTGCACGGAACACTGAGACCAGAGAGAATGTGGCCATCAAGATTCTTGACAAGGAAAAACTTCTCAAGCACAAAATGATAGGCCAGATAAAACGAGAAATATCAACAATGAAACTCATTAGACACCCGAATGTCATATGCTTATATGAGGTGATGGCTAGCAAGACAAAGATTTATATGGTATTAGAACTTGTGACTGGTGGGGCACTGTTTGATAAAATTGCAAGCCACGGCAGACTGAAAGAAGATGAAGCAAGAAGATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCACAGTAGAGGTGTTTTCCATAGAGACTTAAAGCCAGAGAATTTGTTGCTGGGTGCTGACGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTACCTCAACAAGTTCGAGAAGATGGGCTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACAGCAAAGGTTATGATGGTGCAAAGGCCGATCTTTGGTCATGTGGTGTTATTCTTTTTGTTCTAATGGCTGGCTTTTTGCCCTTTGAAGATAACAACCTAAAGGCTTTATATGACAAGATTTTCAAGGCTAAGTTCACTTGTCCTTCATGGTTTTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTGACACACGGATTACAATTGCTGAGGTCATTAAGAATGAGTGGTTCAAGAAGGGGTATAAGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTGAATGATATTTTCAGTGAAGCAGATGATTCACAAAATCTTATAGTGGAGAGGCGAGAAGTGGGGCCTGTAGTACCTGTGACTATGAATGCATTTGACCTTATCCTTACATCTCAGGGCCTCAACCTTGGAAATCTTTTCGAGAAGCAGATGGGTCTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCTACAGTTGAGATGATTTCAAAAATTGAGCAGGCTGCAGTGCCTTTGGGATTTTATGTTAAGAAGAACAACAATAAGTTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATTTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGAGGAGATACTCTGGAATTTCACAAGTTTTACAAGAATCTATCTAATGGGCTCAAAGACATCATTTGGAAAACAGAGCTTACTGATGAAGAAACCGATGGTGCCAGTACATCAACATAA 1851 0.4138 MEDDGEEDKDEFDILKWWKGKTSKYYILSYMARDILAILVSTVSSESAFSTGGRVLDPYHSSLNPITVEALVCTQNWLRPSKVIDDSQSQSNEVVREIEKDFSLERERKGQDEGGKVSGVAAMQEEEVLTARERKSRGLEREREREHQEGEREEEKVEKMQSREGSGGSSGSKIRVGKYELGRTLGKGNFAKVKFARNTETRENVAIKILDKEKLLKHKMIGQIKREISTMKLIRHPNVICLYEVMASKTKIYMVLELVTGGALFDKIASHGRLKEDEARRYFQHLICAVDYCHSRGVFHRDLKPENLLLGADGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHSKGYDGAKADLWSCGVILFVLMAGFLPFEDNNLKALYDKIFKAKFTCPSWFSSSAKKLIKRILDPNPDTRITIAEVIKNEWFKKGYKPPRFSEANVSLDDVNDIFSEADDSQNLIVERREVGPVVPVTMNAFDLILTSQGLNLGNLFEKQMGLVKRETRFTSKCSTVEMISKIEQAAVPLGFYVKKNNNKLKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFHKFYKNLSNGLKDIIWKTELTDEETDGASTST* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01417 616 ProSiteProfiles Protein kinase domain profile. 179 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01417 616 SMART serkin_6 179 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01417 616 SUPERFAMILY Ribonuclease H-like 7 79 IPR012337 -
Rops2g01417 616 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 173 590 - -
Rops2g01417 616 Gene3D Kinase associated domain 1, KA1 478 601 - -
Rops2g01417 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Rops2g01417 616 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Rops2g01417 616 FunFam Non-specific serine/threonine protein kinase 170 258 - -
Rops2g01417 616 Pfam hAT family C-terminal dimerisation region 8 78 IPR008906 GO:0046983
Rops2g01417 616 CDD STKc_SnRK3 178 433 - -
Rops2g01417 616 SUPERFAMILY Protein kinase-like (PK-like) 175 448 IPR011009 -
Rops2g01417 616 Gene3D Transferase(Phosphotransferase) domain 1 171 477 - -
Rops2g01417 616 MobiDBLite consensus disorder prediction 126 174 - -
Rops2g01417 616 Pfam Protein kinase domain 179 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01417 616 Pfam NAF domain 478 538 IPR004041 GO:0007165
Rops2g01417 616 FunFam Non-specific serine/threonine protein kinase 172 472 - -
Rops2g01417 616 ProSiteProfiles NAF domain profile. 476 500 IPR018451 GO:0007165
Rops2g01417 616 CDD CIPK_C 482 597 - -
Rops2g01417 616 FunFam Non-specific serine/threonine protein kinase 476 601 - -
Rops2g01417 616 Coils Coil 136 163 - -
Rops2g01417 616 MobiDBLite consensus disorder prediction 127 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01417 Rops-Chr2 20337284 20348469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01417 168 608 CBL-interacting serine-threonine protein kinases AT1G01140 65.996 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops2g01417 Pkinase 6.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01417 - - gmx:100788746 741.495