Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01408 ATGAAACTCTCTTCAGTTGATTTTAGTCCTCCACCTCAGGAAGAAAAGCGTGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTGATCTACTTTCCCCAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTGGATGCCCATATACCCAATTATCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACTGAGACAGATGAAGTATACGCACAGATGACCTTGCAACCTCTGAATCCTGAAGAGCAAAAGGAGGCATACCTTCCAGCGGAGTTGGGCACTCCGAGTAAACAGCCGACAAACTACTTTTGCAAAATTTTGACAGCTAGTGACACAAGCACTCATGGGGGATTCTCGGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGCCAGCCCAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCGGTGCTGTTTATCTGGAATGACAAGAATCAACTACTTCTTGGCATTCGGCATGCGAATCGACCACAACCGGTGATGCCTTCGTCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGGTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTCGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGACGATACATGGGCACAATAACTGGCATTAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCGTTGACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTGCCTTCATTCCATGCAGGCTTGAAGGATGATGATTTTGGCTTAAATTCTTCTTTGATGTGGCTTCGAGACCCAGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGTATTGGTCCTTGGATGCAGCAGCCAAGGCTTGATCCCTCGATGGTGAATTTGCAAACAGATATGTACCAAGCTATGGCTGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCAAAACAGCATCCAGCTTCCTTACATCAATTTCAGCAACCACAGAACTTCCCCAACAGGACTGCTGCTTTAATGCAGACCCAGATGTTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAATCAAGAAAATCAGCATCCATCTCAGTCTCAGGCTCAGACTCAAACACATTTCCAGCAGCATCTACATCATCAGCACTCATTCAATAATCAGAATCATCATCTGCAACAACAGCAGCAACAGCAACAACCACTGCAGCAACAGCATGTGGTCGATCATCAGCCGATTTCAAGTGCTGTCTCCACAATGTCTCAATTTGTTTCAGCACCTCAATCTCGATCACCACCCATGCAGGCTATCTCTTCACTGGGCCATCAGCAAAGTTTTTCTGAGTCAAATGGGAACCCTGTAACTACTTCTATTGTTTCTCCGCTGCATAGTATATTGAGTTCATTTCCCCATGACGAAACATCTCACCTTCTCAACCTTTCTAGAACAAGTTCTTGGGTTCCTGTTCAACCTTCAACTGCATGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCCGGAGCATCTCAATGTGTTCTGCCTCAAGAACAGCAGCTAGGGCAGCCACAAAGTACCATGTCTCAAAATGCTATTACCTTGCCACCATTTCCTGGTAGGGAGTGCACAATAGAAGGGAGCACTGATCCACAAAACCATTTTTTGTTTGGTGTTAACATAGATCCCTCATCACTTCTAATGCATAATGGGATGTCAAGCCTTAAGGGGGTCAGCAGCAACAGTGACTCATCAACCTTACCTTTTCAATCTTCTCATTACCTGAATATCACGGGCACTGATTCTTCATTGATTCCTGGAATGACACACGGTGTTGGTGAATCAGGCTTCCTACAAACTCCAGAAAATGGAAGCCAAGGAAACCCACCAACCAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACGAAATTCACCAGCTACAATGAGCTACGCAGTGAGCTAGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGATCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTTGTAAATAGTGTATGCTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGAGAAACAATGGCCTTGAGCTTCTGAGCTCGGTTCCAATTCAGAAGCTCTCTAATGGCATCTGTGATGATTACATAGGCCGTGAGGACTCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAGACTACTAA 2715 0.4582 MKLSSVDFSPPPQEEKRVLDSELWHACAGPLVSLPAVGSRVIYFPQGHSEQVAVSTNREVDAHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRHANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDDDFGLNSSLMWLRDPDRGLQSLNFQGIGIGPWMQQPRLDPSMVNLQTDMYQAMAAAALQDMRTLDPSKQHPASLHQFQQPQNFPNRTAALMQTQMLQQSQPQQAFPNNQENQHPSQSQAQTQTHFQQHLHHQHSFNNQNHHLQQQQQQQQPLQQQHVVDHQPISSAVSTMSQFVSAPQSRSPPMQAISSLGHQQSFSESNGNPVTTSIVSPLHSILSSFPHDETSHLLNLSRTSSWVPVQPSTAWPSKRVAVDPLLSSGASQCVLPQEQQLGQPQSTMSQNAITLPPFPGRECTIEGSTDPQNHFLFGVNIDPSSLLMHNGMSSLKGVSSNSDSSTLPFQSSHYLNITGTDSSLIPGMTHGVGESGFLQTPENGSQGNPPTKTFVKVYKSGSFGRSLDITKFTSYNELRSELARMFGLEGELEDPVRSGWQLVFVDQENDDLLLGDGPWPEFVNSVCCIKILSPQEVQQMRNNGLELLSSVPIQKLSNGICDDYIGREDSRNLSTGITTVGSLDY* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01408 904 Gene3D - 768 860 - -
Rops2g01408 904 MobiDBLite consensus disorder prediction 483 548 - -
Rops2g01408 904 Pfam AUX/IAA family 768 855 IPR033389 -
Rops2g01408 904 Gene3D - 124 227 IPR015300 -
Rops2g01408 904 FunFam Auxin response factor 290 362 - -
Rops2g01408 904 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Rops2g01408 904 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Rops2g01408 904 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops2g01408 904 Gene3D - 290 362 - -
Rops2g01408 904 ProSiteProfiles PB1 domain profile. 771 855 IPR000270 GO:0005515
Rops2g01408 904 FunFam Auxin response factor 124 228 - -
Rops2g01408 904 FunFam Auxin response factor 766 860 - -
Rops2g01408 904 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Rops2g01408 904 SMART B3_2 126 228 IPR003340 GO:0003677
Rops2g01408 904 CDD B3_DNA 125 218 IPR003340 GO:0003677
Rops2g01408 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 860 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01408 Rops-Chr2 20171905 20179788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01408 1 484 B3 DNA Binding Superfamily AT1G30330 84.694 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops2g01408 AUX_IAA 1.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01408 - - gmx:100777789 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01408 2 20171905 20179788 Rops2g01408 2 20171905 20179788 ECH