Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01397 ATGGGTCGTAAGAAGATTGATATCGTGTTTGTGAAGGACCCCAACACAAGACAGGTAACATTCTCCAAGCGTCGCACTGGCTTATTCAAGAAAGCAAATGAGTTGTCCATCTTGTGTGGAGCAGAAGTTGCTATTGTCGTGTTCTCCCCTGGGAACAAGCCTTATTCATTTGGGCACCCAAGTGTTGATGCTGTTGCTGCCAAGTTTCTTCAACAAGAGCCCAATCCCAATGATGATGCCCAAAGTAGCACCTCCTCTGATGAAATTTCCAACATGGACACATTGAATCTGGAACTTGCAAATCTTTTGGCCCAAATAAGTGAGGGTGAAAAGAAGGCTTTGGAACTTGATGAGGCCCTCAAACCATATGAAGCCAACCAACTCTCTGACTCTGTGTCCGAGTTGAAAGAATTGCGAGATTCATACTTAGAGCTTAAGTATTTGGTGGAAACCAAGGTTAGTGAGATTGAGGTGTTGGAAATTTTGTCACTCCTTTCACAGCAAAAAGATGCAAAAAAGAGAGAAGAAGAATGA 534 0.4307 MGRKKIDIVFVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDAVAAKFLQQEPNPNDDAQSSTSSDEISNMDTLNLELANLLAQISEGEKKALELDEALKPYEANQLSDSVSELKELRDSYLELKYLVETKVSEIEVLEILSLLSQQKDAKKREEE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01397 177 Coils Coil 92 119 - -
Rops2g01397 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 PANTHER MADS BOX PROTEIN 3 141 - -
Rops2g01397 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops2g01397 177 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Rops2g01397 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Rops2g01397 177 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01397 Rops-Chr2 19957272 19957805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01397 1 168 Type I MADS-box Gene Family AT2G34440 39.429 4.70e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops2g01397 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01397 - - gmx:100791127 188.348