Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01381 ATGGAACAAACGTTACTTCAGAAAGAGTTGGAATCTTCAAGGGAAGAAGATGAAGAGGCTTTCTCAAAGGCAAGTATATGGAGCAAACTCACATTCAGATGGTTGAATCCAATATTTAACTGGGGTCGGATTCAAAAACTTGAACTTTCTCATATTCCTTCTGTTCCTCATTCTGAAACGGCAGAGAAAAATTCTTCCATGTTGATAGAATCACTTCGCAAGCAGAAACTTGAAGGGGGTTCTTTGACAAAAGCTATTGTCCGTTCTATTTGGAAATCCTTGGCCTTAAATGCAGTTTTAGCAGGTGTTAACACTATTGCCTCTTACATGGGTCCATTGTTGATCTCAAATTTTGTGAATTTTTTATTGGGGAATAATGACAATTCAAGTATCCGATATGGACTGATTCTTGCATTCATTTTCTTCCTCTCAAAGACTGTGGAGTCATTAAGTCAAAGACAATCGTACTTTGGTGCTCAAAGAATTGGTATTCGGGTACGTGCAGCTCTTATGACTCAAGTTTATAGCAAGTCCCTGATGATTAAGTGTGCTGGACCCACACATGGTAAAATCATAAATTTGATCAATGTGGATGTTGAGAGAGTAGGGGACTTCTGTTGGTATGTTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATTTTATACATAAATCTGGGTTCTACCCCTTCCATTGCTGCACTTGCTGTCACCATTTTGGTCATGGTGTGTAACACACCTTTGGCGAGAGTGCAAGAAGGTTTGCACTCCAAGATCATGGAATCTAAGGACTCAAGAATCAAAGTGACATCAGAGACTATGAAGAACATCAGAATCTTAAAATTGCATTCATGGGAATCCACATTCTTGCAGAAACTCCTCCAACTTAGGGACACAGAGAGAAGGTGGCTGCAGAAATACCTCTATACATGCTCAGCTGTGGCCACTCTTTTTTGGACATCTCCAACTTTAGTTTCTGTTGCCACTTTTGGTGCTTGTATACTTGTGAAAACAGAACTAACAGCAGCTACAGTCCTCTCAGCTTTAGCAACATTTCGTATATTACAAGAACCTATCTACAACTTACCTGAGCTAATTTCCATGATAACTCAAACAAAAGTCTCTGTCGATCGAATCCAGGAATTCATCAAGGAAGAGGATCAAAACCAATTCATGTATAGACAAGCTCCAAAAATTTCAGCAATTGCTATTGAGATCAAGCCAGGTGAATATGCATGGGAAACAAATGATCAAACCCACAAGAAACCAACAATTCAAATTACAGAAAAATTAATGATAAAGAAAGGTCAGAAGGTGGCAGTTTGTGGGTCAGTGGGGTCTGGCAAATCAAGCTTGCTCTGCTGTATGCTTGGTGAGATTCCATTAGTTTCTGGGGCAGTAACCAAAGTCTATGGAACCAGAAGTTATGTACCCCAAATTCCATGGATTCAGTCTGGAACTGTGCAAGAAAATATATTGTTTGGAAAGCAAATGAAGAAGGACTTCTATGAAAATGTTTTAGAGGGCTGTGCTTTGCACCAGGATATCAACATGTGGAATGATGGAGATTTGACCCTAGTGGAGGAGAGGGGCATAAACTTGAGTGGAGGGCAGAAACAGCGGGTTCAACTTGCAAGGGCTGTTTACAATGATTCAGATATTTATTTCCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAACTCATTTGTTTAAGAAATGTCTTATGGAACTTTTATATGATAAAACGGTTGTTTATGCTACCCATCAACTGGAATTCTTGAAAGCCGCAGATCTTATCTTAGTAATGAAAGATGGGAAAATAATCGAGTTTGGAAGGTATAATGATCTCATAGCATGTCCCAATTGTGAACTTGTTAAACAAATGGCAGCTCATGAAGAAACAGTAAACCATATACATCCATGCCAAGAAGATGATTCTGTTAGTTGCAGATCCTGCCAAAAGAATCAAATTGAAGTTGCTGAAGAAAATATTCAAGAGACCATCATGGATCGGAAGAGAACCAAAGAAGAGGAAGCTGTGACTGGTAGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCAGCTTATAGAGGAGCACTTGTTCCTGTTATTCTTCTCTGTCAAATTATCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCTTGGGCTACAGAACAAACGGGCAGGGTCAACAATGGGAAGCTTATGGGAACATTTGTTCTTCTGTCCGGTGGCAGCTCCATCTTCATACTGGGAAGGACTGTTTTAATGGCAACAGTTTCTGTAGAGACTGCTCAGCGTCTTTTTCATGGAATGATCACATCAGTTTTCAGGGCACCTGTTTCATTTTTTGACAGCACACCTTCAAGCCGAATTCTAAGCAGGTCCTCTACGGATCAAAGTACAGTAGACACAGACATACCATACAGATTAGCTGGACTAGTATTTGCACTTATCCAGTTATTGAGTATCATCATACTAATGTCCCAGGTTGCCTGGCAAATCATTCTCCTCTTTCTTGTGGTTCTTGCTATTTCTGTCTGGTATCAGGCTTATTACATTACTACTGCAAGGGAATTAGCCAGGATGGTAGGGATTCGAAAGGCGCCGATCTTGCACCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATCCGTTGTTTCGATCAAGAACAAGTATTCTTGAACAAAGTTATGGCTCTAATTGATGATTATTCTCGGGTAGCCTTTCACAATTATGCCACCATGGAATGGTTATCTGTCAGAATCAATTTTCTCTTCAATCTTGTGTTCTATTTTGTTCTTGTCATCTTGGTCACACTGCCAAGGTCTGCCATTGATCCCAGCTTGGCAGGTCTTGTAGCTACTTATGGTTTGAACTTGAATGTGCTTCAGGCTTGGGTTATATGGAATCTTTGCAACGTTGAAAACAAAATGATATCAGTTGAGAGAATATTACAATTCTCTAGCATACCAAGTGAAGCGCCATTAATTATTCAAGATTGTAGGCCTGAACCAGAGTGGCCTAGGGATGGAAAAATTGAACTTCATAACCTTCATATACAGTATGATCCCGCTGCTCCTAGGGTTCTCAAAGGTATCACTTGTATCTTTCCAGGACAAAAGAAAATTGGAATAGTAGGCAGGACAGGGAGTGGAAAATCAACTCTGGTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGATGCATAGTTATTGATGGTTTAAATATTTCCAAGATTGGTCTACAAGATTTAAGATCTAAGCTTGGTATAATTCCTCAGGATCCAACTTTGTTTCTAGGTACTGTAAGGACAAACTTGGATCCTCTGGAACAACATACAGATCAAGAACTTTGGGAGGTTCTTAGCAAGTGTCATCTTGCCGAAATAGTAAGGCAGGATCCAAGGCTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAACTGGAGTGTTGGACAAAGACAGCTAGTTTGCCTTGCTAGGCTGCTACTGAAGAAAAGAAGAATTTTGGTCCTGGATGAGGCAACTGCATCCATTGACACTGCAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGTGGATGCACGGTCATTACGGTAGCACATAGAATTCCTACAGTCATTGATAATGATTTGGTTTTGGTCCTTGATGAAGGGACAATTGTGGAGTATGATCAACCAGCTCAATTGCTACAGAACAATTCTTCTTCATTCTCAAAGTTGGTATCAGAATTTTTGAGGAGATCATCCCAATCCCAAAGTAATTGTCAAAAAAGATAA 3825 0.4016 MEQTLLQKELESSREEDEEAFSKASIWSKLTFRWLNPIFNWGRIQKLELSHIPSVPHSETAEKNSSMLIESLRKQKLEGGSLTKAIVRSIWKSLALNAVLAGVNTIASYMGPLLISNFVNFLLGNNDNSSIRYGLILAFIFFLSKTVESLSQRQSYFGAQRIGIRVRAALMTQVYSKSLMIKCAGPTHGKIINLINVDVERVGDFCWYVHGVWLLPVQVILALVILYINLGSTPSIAALAVTILVMVCNTPLARVQEGLHSKIMESKDSRIKVTSETMKNIRILKLHSWESTFLQKLLQLRDTERRWLQKYLYTCSAVATLFWTSPTLVSVATFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMITQTKVSVDRIQEFIKEEDQNQFMYRQAPKISAIAIEIKPGEYAWETNDQTHKKPTIQITEKLMIKKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSGAVTKVYGTRSYVPQIPWIQSGTVQENILFGKQMKKDFYENVLEGCALHQDINMWNDGDLTLVEERGINLSGGQKQRVQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMELLYDKTVVYATHQLEFLKAADLILVMKDGKIIEFGRYNDLIACPNCELVKQMAAHEETVNHIHPCQEDDSVSCRSCQKNQIEVAEENIQETIMDRKRTKEEEAVTGRVKWSVYSTFVTSAYRGALVPVILLCQIIFQVMQMGSNYWISWATEQTGRVNNGKLMGTFVLLSGGSSIFILGRTVLMATVSVETAQRLFHGMITSVFRAPVSFFDSTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIILMSQVAWQIILLFLVVLAISVWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFDQEQVFLNKVMALIDDYSRVAFHNYATMEWLSVRINFLFNLVFYFVLVILVTLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEPEWPRDGKIELHNLHIQYDPAAPRVLKGITCIFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGCIVIDGLNISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLSKCHLAEIVRQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGTIVEYDQPAQLLQNNSSSFSKLVSEFLRRSSQSQSNCQKR* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01381 1274 CDD ABC_6TM_ABCC_D2 709 999 IPR044726 GO:0140359
Rops2g01381 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 626 IPR027417 -
Rops2g01381 1274 FunFam ABC transporter C family member 3 1007 1259 - -
Rops2g01381 1274 FunFam ABC transporter C family member 5 672 1005 - -
Rops2g01381 1274 CDD ABCC_MRP_domain1 408 613 - -
Rops2g01381 1274 SUPERFAMILY ABC transporter transmembrane region 86 390 IPR036640 GO:0005524|GO:0016020
Rops2g01381 1274 Pfam ABC transporter 435 565 IPR003439 GO:0005524
Rops2g01381 1274 CDD ABCC_MRP_domain2 1022 1242 - -
Rops2g01381 1274 Gene3D - 387 654 IPR027417 -
Rops2g01381 1274 SMART AAA_5 439 621 IPR003593 GO:0016887
Rops2g01381 1274 SMART AAA_5 1050 1241 IPR003593 GO:0016887
Rops2g01381 1274 Gene3D ABC transporter type 1, transmembrane domain 672 1005 IPR036640 GO:0005524|GO:0016020
Rops2g01381 1274 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 22 1265 - -
Rops2g01381 1274 Gene3D ABC transporter type 1, transmembrane domain 83 386 IPR036640 GO:0005524|GO:0016020
Rops2g01381 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 95 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g01381 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1250 IPR027417 -
Rops2g01381 1274 Coils Coil 664 684 - -
Rops2g01381 1274 CDD ABC_6TM_ABCC_D1 96 383 IPR044746 GO:0140359
Rops2g01381 1274 FunFam ABC transporter C family member 10 78 391 - -
Rops2g01381 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g01381 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 410 636 IPR003439 GO:0005524
Rops2g01381 1274 Gene3D - 1007 1260 IPR027417 -
Rops2g01381 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1258 IPR003439 GO:0005524
Rops2g01381 1274 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524|GO:0016887
Rops2g01381 1274 Pfam ABC transporter 1042 1189 IPR003439 GO:0005524
Rops2g01381 1274 SUPERFAMILY ABC transporter transmembrane region 710 1004 IPR036640 GO:0005524|GO:0016020
Rops2g01381 1274 FunFam Multidrug resistance-associated protein 4 393 653 - -
Rops2g01381 1274 Pfam ABC transporter transmembrane region 713 951 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops2g01381 1274 Pfam ABC transporter transmembrane region 96 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01381 Rops-Chr2 19741939 19748307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01381 408 662 Calmodulin-binding Proteins AT2G36910 28.114 5.49e-20 95.1