Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01375 ATGGAGTCCGATTCAGACTCCGATGGATCTCACGTCTCTACAACTCCTCCAAGACAAGTAAGCCCACCTCCTCCACCACCATCACCTGCTGCACCAAAAGCACCTCTTCTAGTTTCCAACAAATCCAGAATCAGAAAAATCAAACCCTCAAAACCCAAAACACTCCCTTCCGAACCCTCAAAAACCCCTTCAAAATCCGAAACGACACAACAAGACCCTTTCTGTCTGTCTTCTCTACCCTTCCAAATTCGACGAGCCTCTGATTCTTTTCCCGCGCCTTCAACTTCCCACTCCATTGAAACCCTCCCCGCCGGGTTCTTCTCCAAATCAGCTTCCTTCTCGAAGATTCGAAGACCCTTTCTCGATCTAGAATCTTGTGAAACCGAGCCCGTTCTTAATTCCGTGTCCAAGGCTGAGACCAGTGACGCTGGGAACTCGGGGAAATTAGGGAGGAAGCATCCTAACCTGATAGGTGCTAGTGCTCCAATGCCGACAGTGAAGTTAAGAAAATGCGGTGGCAGCGAAGGAAACTTTGTGAGGTTGAACTTGAGTGGGAAGAGGAAGAAGTTTGTGAACAAAGGGTGGAAGAAAAACGGGAAATTTCGTGGTGGGAAAAGGTACAGGAGAAGTAAAGGTAAATTGGAAAATGGAAATGGGGATCAAGTGGAGCATTTTGAAGAGGATGATTTGGTTGTAGGAAGTGCAGAGCAACAGCAGAAGAAAAGGGGATGTTCTAGGAGTAGTAAGACAAGAGAAATTGATTGCAAAGAGATGGAAGAGGCTTTGTCTGCAGCTAGAGTTGAGGCTTCGGATGAGAACTTGGTGAAGTTGTTGAATTTGATTTATGGTTATGATTCTTTTAGAGATGGGCAATTGGAGGCAATCAAGATGGTTCTTGCTGGGAAATCAACCATGCTTATTTTGCCAACCGGTGCAGGGAAGTCACTGTGTTATCAGTTACCTGCTGTGATTTTGCCTGGGATTACACTGGTTGTTAGTCCATTGGTGGCCTTGATGATTGATCAGCTAAGGCAATTGCCCTCTCTCATTAATGGGGCTCTCCTTAGCAGCACTCAGACACCTGAAGAAGCCTCTGAAACACTCAACCAGCTTCAACAAGGCACTATAAAGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCTGTTATATCTGAAATGTCAGCTCTCTCTCTTGTTGTAATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCTCTGCTTCATAAAAGGCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTTTAGATATTCCTTGCACAAATCTTATTCAGAAGGCGCAGTTAAGGGATAATTTACATTTATCGGTGTCTTTGGTCAAAAATAGAATGAAAGACCTACTGGTTCTGTTAAAGTCTTCTCCTTTTGTGGAAGTCCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATATAATTAGCAGATACTTGAATGATAACAATATCTTGGCAAAGAGTTATCATAGTGGTATCGCTGCAAAGGAACGTCGTTATGTGCAGGAGTTGTTCAATTCCAATAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTGGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTTTGATGATGAGACATATTTCAAACTTCGGAGTCTAATACACAGTGAAGGAGTAGATGAATATACAGTGAATAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCCGTGGGAAAATTTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTCACACTTTTGACACGCTTGGAGTTGGGCGATGTGCAGTACTTGCATTTACTTCCACAGATAAACGCAACTTGTGCTTTGAATTTTCATAAGACTCCGCCATCGTTCCTTGCTCAAAAGGTTTCTGCCATTGCTGTAATTCTAAAAAGGTCTGAAAATAAGCAAGGGCAATATGTTTTTGATATTCCAACTGTGGCAAATGACATGGGGATTACAGCAATTGAATTAACAAATCAGTTGTACGACCTGAAGTTGGTGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATTGTTGAAGTCCCGACAGAATTTTTGTCTTTATCAGCAGATATTACGCGATGGTTATCAGAAGTTGAAAGATGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTCGTAGTAAATCTATGTGATAAGATGCACGGTTGCAATAGTGCCGATCACACACCATGCTTACAAAGGAAAATATCGGATTACTTCGCTGGAGTTGAAAATACCGATTTCTGCAATAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCATTGCGAGGGTAATGCATGGAATTGCAAGCCCAGTCTATCCCTCTGCAACATGGTGTAAAACCCATTTCTGGGGAAGGTATAAACATATAGACTTTAAGGCGGTGATGGAAGCAGCAAAGGAAGAACTCAAGAATTTTGTTGGAAAGGATATGCTGTAG 2775 0.4223 MESDSDSDGSHVSTTPPRQVSPPPPPPSPAAPKAPLLVSNKSRIRKIKPSKPKTLPSEPSKTPSKSETTQQDPFCLSSLPFQIRRASDSFPAPSTSHSIETLPAGFFSKSASFSKIRRPFLDLESCETEPVLNSVSKAETSDAGNSGKLGRKHPNLIGASAPMPTVKLRKCGGSEGNFVRLNLSGKRKKFVNKGWKKNGKFRGGKRYRRSKGKLENGNGDQVEHFEEDDLVVGSAEQQQKKRGCSRSSKTREIDCKEMEEALSAARVEASDENLVKLLNLIYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAVILPGITLVVSPLVALMIDQLRQLPSLINGALLSSTQTPEEASETLNQLQQGTIKVLFVSPERFLNEEFLSVISEMSALSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKRLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQKAQLRDNLHLSVSLVKNRMKDLLVLLKSSPFVEVQSIIIYCKFQSETDIISRYLNDNNILAKSYHSGIAAKERRYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFFDDETYFKLRSLIHSEGVDEYTVNKFLREVFPADKNSRGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLHLLPQINATCALNFHKTPPSFLAQKVSAIAVILKRSENKQGQYVFDIPTVANDMGITAIELTNQLYDLKLVGEITYEMKDLAYCYRIVEVPTEFLSLSADITRWLSEVERCKVRKMDAMFNAAYFVVNLCDKMHGCNSADHTPCLQRKISDYFAGVENTDFCNKIGQSSPFLRADIKVFLQSNSQARFTPRAIARVMHGIASPVYPSATWCKTHFWGRYKHIDFKAVMEAAKEELKNFVGKDML* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01375 924 CDD DEXHc_RecQ4-like 275 468 - -
Rops2g01375 924 PANTHER DNA HELICASE RECQ FAMILY MEMBER 266 778 - -
Rops2g01375 924 MobiDBLite consensus disorder prediction 17 33 - -
Rops2g01375 924 MobiDBLite consensus disorder prediction 134 160 - -
Rops2g01375 924 FunFam ATP-dependent DNA helicase Q4 255 465 - -
Rops2g01375 924 Pfam DEAD/DEAH box helicase 289 451 IPR011545 GO:0003676|GO:0005524
Rops2g01375 924 CDD SF2_C_RecQ 473 606 - -
Rops2g01375 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 643 IPR001650 -
Rops2g01375 924 MobiDBLite consensus disorder prediction 201 220 - -
Rops2g01375 924 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 402 411 IPR002464 -
Rops2g01375 924 MobiDBLite consensus disorder prediction 1 78 - -
Rops2g01375 924 FunFam ATP-dependent DNA helicase Q-like 5 473 664 - -
Rops2g01375 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 465 IPR014001 -
Rops2g01375 924 Pfam Helicase conserved C-terminal domain 500 596 IPR001650 -
Rops2g01375 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 616 IPR027417 -
Rops2g01375 924 MobiDBLite consensus disorder prediction 55 78 - -
Rops2g01375 924 Gene3D - 473 664 IPR027417 -
Rops2g01375 924 Gene3D - 256 464 IPR027417 -
Rops2g01375 924 NCBIfam RecQ family ATP-dependent DNA helicase 277 625 IPR004589 GO:0004386|GO:0006310
Rops2g01375 924 SMART ultradead3 283 479 IPR014001 -
Rops2g01375 924 SMART helicmild6 516 597 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01375 Rops-Chr2 19658666 19665834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01375 506 629 Eukaryotic Initiation Factors Gene Family AT3G19760 30.952 8.37e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01375 K10730 - gmx:100811214 1291.95