Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01362 ATGATGGATGTTGCTGAGGTTGAAGAAAATCTATTTGCTGCTAGTGATGCCAAGTTACATGGAAAAATGTGCCAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAATCCGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAAGCCAAGAATGTTCTTCGACACTGCTCAGAGTGTAGTAAACTTTACCTGGCTGTAACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCAAAATGTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTACAAGAGATCGTGAATGAATTTGCAAGTGTGACATTTGCACTTGACCCATTAGAGAAGCAAGTTGGCGATGATTTAATTGCCTTGTTACAACAGGGGAGAAGATTTAATGACTCTAATGACAGTAATGAGCTTGAATCTTTTCACCAAGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCGGCTCTTACTGAAAGAAGAGCTCTCAAGAAACTTATAGAAAGGGCTCGGGCCGAGGAAGACAAGCGGAAGGAATCGATTATTGCATATCTTTTACATCTCATGAGGAAGTACTCCAAGTTATTCAGAACCGAGTTCTCAGATGACAATGATTCTCAGGGTTCTACACCTTGTTCTCCCACTGTTCAGGGATCTTTTGAGGATGGTGTTCCTGGAGGTCATTGTCAGGCTTTTGACCGACAGCTTTCAAAATTTAGTTCCTTTAATTTCAAGCTAAATAATAATAGGGAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCGATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCGAGGATGGGCATGACAACTGCCCAAAGACCCAACAGAAACTTTCACATCTTGGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCGGAAGGCCCTCCCGAATCTCTTGATCTTAACTATTGGAGATTGTTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAGGAAAGTGGTATCTCAGAGGAGTCTGGGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGGGACCGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGAAGAGGAAATGTGAAGTGGTAGAACAGTTGAGGTTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTATGCAGTTTTTACAATCAGCTGTACATGAAGGGAATTTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGTTATCAGCCGGAGTATTATCATTGTTGGAAGAAATGATTTCTAAAACGAATTCTTATGGTTGTGCAACCGCTCTATATCTAAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTACAGTTCCTAATCCAGCTTCTTCAATCTGACTCTGATGTTCAATGCAAGCAAGATTCTCTCCTCTCTCTTTATAATCTTTCTACTGTGCCCTCCAATATCCCACACCTCCTTTCATCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCCATTTTGATAAATTTAGCTACTTCTCAAGGCGGAAGGGAGGTAATGGTATCAACTCCTGGACTCATTAGTGCATTGGCTTCGATATTGGACACGGGTGAGCTCCTAATGCAGGAGCAAGCAGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGAAATGTTGCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCCCAAGAGGAAGAGAAAAATCTCAGAAACTCCTGATGCTGTTCCGAGAGCAACGACAACGAGACCATTCACCAGATAAGACACATCAGTGCCCACCTGAAACTAGTGATCTGTCTGTGCCACCTGCTGAAATGAAACCGCTATGTAAGTCGATGTCTAGAAGAAAGACGGGGAAAGCTCTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTCTTTCCCAGTGTTAA 2301 0.422 MMDVAEVEENLFAASDAKLHGKMCQALSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFASVTFALDPLEKQVGDDLIALLQQGRRFNDSNDSNELESFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRTEFSDDNDSQGSTPCSPTVQGSFEDGVPGGHCQAFDRQLSKFSSFNFKLNNNRESGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFEDGHDNCPKTQQKLSHLGLTPNYCVKGLVASWCEQNGVPVPEGPPESLDLNYWRLLLSESESTNSRSVNSVSSCKLKGVKVVPLEESGISEESGENGTESVSAQEEGTEQYFSFLKVLTEGNNWKRKCEVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEGNLMAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTNSYGCATALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLLSLYNLSTVPSNIPHLLSSGIMDGLQSLLVGQGDCMWTEKCIAILINLATSQGGREVMVSTPGLISALASILDTGELLMQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTPRGREKSQKLLMLFREQRQRDHSPDKTHQCPPETSDLSVPPAEMKPLCKSMSRRKTGKALSFFWKSKSYSLSQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01362 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Rops2g01362 766 MobiDBLite consensus disorder prediction 710 734 - -
Rops2g01362 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Rops2g01362 766 SUPERFAMILY RING/U-box 274 357 - -
Rops2g01362 766 SMART arm_5 541 582 IPR000225 GO:0005515
Rops2g01362 766 SMART arm_5 456 500 IPR000225 GO:0005515
Rops2g01362 766 SMART arm_5 625 666 IPR000225 GO:0005515
Rops2g01362 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Rops2g01362 766 PANTHER U BOX DOMAIN-CONTAINING 24 711 - -
Rops2g01362 766 Coils Coil 176 196 - -
Rops2g01362 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Rops2g01362 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Rops2g01362 766 CDD RING-Ubox_PUB 282 334 IPR045210 -
Rops2g01362 766 Gene3D - 400 717 IPR011989 -
Rops2g01362 766 SUPERFAMILY ARM repeat 432 703 IPR016024 -
Rops2g01362 766 FunFam RING-type E3 ubiquitin transferase 397 716 - -
Rops2g01362 766 FunFam RING-type E3 ubiquitin transferase 280 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01362 Rops-Chr2 19530101 19535217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01362 2 763 U-box Gene Family AT1G24330 66.495 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01362 - - gmx:100794099 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01362 2 19530101 19535217 Rops2g01362 2 19530101 19535217 ECH
Rops11g03728 11 70945383 70950615 Rops2g01362 2 19530101 19535217 PCT