Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01358 ATGAAGGTTGCTCTTTCAGCCAAGAACAAACTTGGTTTCATCAATGGTTCCATTCCCAAATCTCTTGATGATCCTTCAACTTTATTTGCTTGGGAGTGCAATAACAACATCGTCATTTCTTGGATCCTCAATTCAGTTTCCAAAGATATTGTTCCAGCCGAAGCCGTTGTCATGGTGAAGTATTCAAGAGAACCTGACAATCCCACCAAATCCTGTAAGGCCAGAGGGGCTGACCTTAGGGTTCATTTTAAGAACACTAGGGAAACTGCCTTTGCCATCAGAAAGTTGCCCTTGTCAAAGGCTAAGAGGTATTTGGAGGATGTTCTTGCCCACAAACAGGCCATTCCGTTCAGACGTTTCTGTGGTGGTGTTGGGAGGACAGCCCAGGCTAAGAACAGACACTCTAATGGACAAGGACGGTGGCCTGCCAAATCAGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTAAAAGGTTTGGATGTTGATGCTCTATACATTTCTCATATCCAAGTCAATCAGGCACAGAAGCAAAGACGCAGAACATACCGAGCCCACGGAAGAATAAATCCGTACATGTCATCTCCATGCCACATAGAGTTGGTATTATCTGAAAAGGAAGAGCCTGTCAAGAAGGAGCCCGAGAGTCAGTTGGCAACAAGCAAGAAGAAGTCCCAAGCTCTTCGAAGTGGTGCTTCATCTTAA 720 0.4444 MKVALSAKNKLGFINGSIPKSLDDPSTLFAWECNNNIVISWILNSVSKDIVPAEAVVMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLSKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELVLSEKEEPVKKEPESQLATSKKKSQALRSGASS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01358 239 SUPERFAMILY Ribosomal protein L22 58 211 IPR036394 GO:0003735|GO:0005840|GO:0006412
Rops2g01358 239 Hamap 50S ribosomal protein L22 [rplV]. 57 211 IPR005721 GO:0003735|GO:0006412|GO:0015934
Rops2g01358 239 PANTHER 60S RIBOSOMAL PROTEIN L17 58 232 IPR005721 GO:0003735|GO:0006412|GO:0015934
Rops2g01358 239 CDD Ribosomal_L22 72 208 IPR001063 GO:0003735|GO:0005840|GO:0006412
Rops2g01358 239 ProSitePatterns Ribosomal protein L22 signature. 184 208 IPR018260 GO:0003735|GO:0005840|GO:0006412
Rops2g01358 239 MobiDBLite consensus disorder prediction 211 239 - -
Rops2g01358 239 Pfam Ribosomal protein L22p/L17e 74 209 IPR001063 GO:0003735|GO:0005840|GO:0006412
Rops2g01358 239 NCBIfam 50S ribosomal protein L22 61 211 IPR005721 GO:0003735|GO:0006412|GO:0015934
Rops2g01358 239 FunFam 60S ribosomal protein L17 58 232 - -
Rops2g01358 239 Gene3D Ribosomal protein L22/L17 58 238 IPR036394 GO:0003735|GO:0005840|GO:0006412
Rops2g01358 239 MobiDBLite consensus disorder prediction 225 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01358 Rops-Chr2 19447302 19457738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01358 58 239 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.363 4.82e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01358 K02880 - zju:107428381 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01358 2 19447302 19457738 Rops2g01358 2 19447302 19457738 ECH
Rops11g03722 11 70876225 70878154 Rops2g01358 2 19447302 19457738 PCT