Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01348 ATGGAGTGGAATGCGAAATCTCCCTCGCCGTGGGATTGGGAGTACCTATCATTCTTCAATACAAAAGCAACTGAAAATCCAAAATTACAACCACCAAACAGGAGTGGTGAAGCAAACCGAGAAATCAATGTTGGGTTGTTTGATACATCGGGTGGCAGTGGTTGTTCTGGGTCTGAGCTAGTACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAGTTCATCATCAAATAGGGATAGCAAAACATCGATATTCACTTTTGAATGTTCCCAAGATGATTCTAGTGATAAAAAAGAATTATCTAAAGAAGAGCTAGTGGAAACTTCTCATGCACCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGGCTGTACTTTGAGGATGTGTGCCCAGGAAGTGATTCCAAGAACCTATCTTTCTCTGGGGCTCCCATGTCATCTTTAAACATTGGAAAGAAATGTAAGTCCAATGGTCAGAACATACAATCTCCACGCTGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGGAAACATAGAGTTTGTGAAAGTCATTCCAAATCCACTAAGGTGGTTATAGCTGGTTTGGAACGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGGACTGTTAGAGTTTGATGAAAAAAAGAGAAGCTGCAGGCGTCGACTTTCAGATCACAATGCAAGGCGCCGTAAACCTCATCCTGAAGCCGTCCAATTAAGTCAATCAGCTTTGTCTTCATCACACTATGATGGGAGGCAACATATGAGTCCATTTGCTTATTCAAGGACTGCTACAAATTTAGCCTGGCAAAACACACTCAACTGCAAGCTCCCCCAGACCAAAGATTTTCTCATGAAGCCTGCAAAAGCCAATAATGAGATACCAAATATTGTCACCATGCTTTCTGATGATTCCAACATCCCTTTTACATGCAAAGGCCTGGCGACCAAGAGTATCAATCCAGCTATAGAAGATTCCATTACCTCCTCTGCTCCAAGTGCCACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTTCATACGAGACTAAATCCATTTCTCTAGAACACTCCAATCACACAACCAGTAGCGCTCAGCCTGTAATGCATGCAATGAGTCAGCACTTTCCTCTTGCTTCATCCGATTATTGGCATACTGATCAACAAGTCAATTCCAGTACATGGATCTCGCACTCAAATCGCATTCATGAATTTCAACTGTGCAGAGAACCTTATGAGTCTGGTTTTCCTCATGACCAGTTGGATTAA 1335 0.4315 MEWNAKSPSPWDWEYLSFFNTKATENPKLQPPNRSGEANREINVGLFDTSGGSGCSGSELVHASSSRSSKSASISSSSNRDSKTSIFTFECSQDDSSDKKELSKEELVETSHAPEPSSVSGEPLLTLKLGKRLYFEDVCPGSDSKNLSFSGAPMSSLNIGKKCKSNGQNIQSPRCQVEGCGLDLSSAKDYHRKHRVCESHSKSTKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPHPEAVQLSQSALSSSHYDGRQHMSPFAYSRTATNLAWQNTLNCKLPQTKDFLMKPAKANNEIPNIVTMLSDDSNIPFTCKGLATKSINPAIEDSITSSAPSATQDFHRALSLLSTNSWGSYETKSISLEHSNHTTSSAQPVMHAMSQHFPLASSDYWHTDQQVNSSTWISHSNRIHEFQLCREPYESGFPHDQLD* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01348 444 MobiDBLite consensus disorder prediction 49 80 - -
Rops2g01348 444 MobiDBLite consensus disorder prediction 24 80 - -
Rops2g01348 444 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 395 IPR044817 GO:0003677
Rops2g01348 444 MobiDBLite consensus disorder prediction 97 122 - -
Rops2g01348 444 MobiDBLite consensus disorder prediction 97 111 - -
Rops2g01348 444 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Rops2g01348 444 Pfam SBP domain 175 248 IPR004333 GO:0003677
Rops2g01348 444 SUPERFAMILY SBT domain 173 254 IPR036893 GO:0003677|GO:0005634
Rops2g01348 444 Gene3D - 165 236 IPR036893 GO:0003677|GO:0005634
Rops2g01348 444 MobiDBLite consensus disorder prediction 240 267 - -
Rops2g01348 444 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01348 Rops-Chr2 19223202 19228132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01348 1 427 SBP-box Gene Family AT5G43270 38.496 1.51e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops2g01348 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01348 - - gmx:100781289 545.043