Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01340 ATGAGTTTGCTCCATGTAATTCTGTTCGGTCTAAAACTGGGGCATCTTCTTTTGGTGATATGTTGCTGGCTTGTGTCTGTGGTTTACCTGAACCGGTTCATTAGCAGTGGAATTACTGATACCAAGATGGGTTTTTTGGGTGATGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTCAGGGCATGGTTACAAAATCCATCAACAATACTATCAGTATATTGGGTCCAAGAAAGTGAAGAGAGCTTTGTGGAGAAAGCTTTTACTGACATGGGTAGTGGGTTGGACCATAGTATCTTTGTGGATCTTCTGCTGTATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCAAGCATGTGTGATGAGAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAATCATATACAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCAGCCATCGATCAGAGAACTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCAGTAAGGGTGCTCCATTCTGAAAGGGAACATTTTGAGAAGCAACAAGGCTGGACTATTAAGAGAATGGATACTCTGGAGCAGAACCCAGTTCATAAGGTCGATTATGCCCCAGAGGCATTGGAGCCATCTCCCATTCAGGAAGAATATGCTCCTGTCATATTTGCACAGGATACAATTTCACATGTGATTTCTTTTGACATGCTTTCTGGAAAGGAAGACCGTGGAAATGTGTTGCGTGCAAGAGAATCAGGAAAAGGGGTTTTAACCGCACCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTTTACAAGAGAGATCTTCCATCAGATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGTGGTGTCTTTCATGTGGAATCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACAAATCATACTTATCCAATTGTCATGTATGGCTCAAATGTATCAGGGGATGTGTTCTATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCACACAGAAACCACCGTGGCCATGGTTGGCAATAACAACTTCAATTGGAATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCCACTGTGAATCGAATTGCAAAAGTAGAAGATGATTACCGTAAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACTCAACAGGAATATGTCAGAACGGCACAAGACAGTGGAAAAGCACTGGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGGAAGCTAGAGCTTGAGGCAGTGGTCTTTGACATACGAGCAATTTTGGATGATGTATTGTTACTATTTTCTGAGAAGTCTCACGGAAAAGGAGTAGAGTTGGCAGCTTATGTGTCAGATCAGGTTCCTGAACTGTTGATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAATCTCATGGGTAACTCGATTAAGTTCACGGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGGGGAGGTTGTCCATCCAATAGAGGTTGAAAAAGAATCAAACTCAGATGATACCTTGAGTGGCTTCCCTGTTGCTGATAGCCACAGGAGCTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTGCTCATCCTCCTCCAGGGATCTCATCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTAGAATCTCAGCCCCTCATCTTCACTCCATTCATGCAGGTAGGTTCATCCATCTCCAGAAAACATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGTAAGCACACCTAAGATTGGATCCACTTTCACTTTCACTGCTGTATTCACCAATGGACTCTCCAGTTCAGGTGAGTGTAAAATTCAGCAAATCAACAACCAACATCAACCTGCATCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCGAGATCTGTTCGAGCAAAAGTGTCTAGATATCGCATCCAACGGCTTGGCATTCATGTTGAAATGGTTTCAGATTTAAACCGAGGTTTGTCAACCATAAGCAATGGGACTAGAATTATCAATATGGTCCTGATTGAGCAGGAGGTCTGGGACAGAGATCCAGGCATGTCATCTCACTTTGTCAATAACACAGGGAAAGTTGATAATGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCAAGTAGTGTAACCTCGGGTGTTCATAATCCTACTGTCATCACAAAACCTCTGAGAGCAAGCATGCTTGCTGCTTCTCTACAACGAGCCATGGGTGTTAGGAACAAGGGAACTCCTCCAAATAGGGAACTCCAAAGTTTGTCTCTTCGCCATCTTCTTCTTGGGAGGAAAATTTTAATTGTAGATGACAATGGTGTGAACCGTGCTGTAGCAGCTGGTGCTTTGAAGAAGTATGGAGCAGAAGTGGTTTGTGTTAGCAGTGGAAAAGATGCCATCACTTCACTGAAGCCACCCCATCGGTTCGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAAAAGAATTAGAGAGATGGAGGATAATGTGAACCGAGAATTGTCCATGGATGGATTTGAGAATATTTCAAACTGGTATGTGCCCATTTTAGCCATGACTGCAGACGTGATTCAGGCTACACAGGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTCGGTTTTTCCAATCATCTTGA 3090 0.4278 MSLLHVILFGLKLGHLLLVICCWLVSVVYLNRFISSGITDTKMGFLGDGGKMWLKWWEKISGHGYKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWTIVSLWIFCCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDTLEQNPVHKVDYAPEALEPSPIQEEYAPVIFAQDTISHVISFDMLSGKEDRGNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSDATPNERIQATDGYLGGVFHVESLVEKLLQQLASKQTVIVNVYDTTNHTYPIVMYGSNVSGDVFYHVSTLNFGDPFRKHEMHCRFTQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYRKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQDSGKALVSLINEVLDQAKIEFGKLELEAVVFDIRAILDDVLLLFSEKSHGKGVELAAYVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVGEVVHPIEVEKESNSDDTLSGFPVADSHRSWEGFKAFSQEGPLGSCSSSSRDLINLIVSVEDTGEGIPLESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSTPKIGSTFTFTAVFTNGLSSSGECKIQQINNQHQPASSAFEGMTALVIDPRSVRAKVSRYRIQRLGIHVEMVSDLNRGLSTISNGTRIINMVLIEQEVWDRDPGMSSHFVNNTGKVDNGVPPKLFILVNSSSSFKASSVTSGVHNPTVITKPLRASMLAASLQRAMGVRNKGTPPNRELQSLSLRHLLLGRKILIVDDNGVNRAVAAGALKKYGAEVVCVSSGKDAITSLKPPHRFDACFMDIQMPEMDGFEATKRIREMEDNVNRELSMDGFENISNWYVPILAMTADVIQATQEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01340 1029 CDD REC_hyHK_CKI1_RcsC-like 895 1022 - -
Rops2g01340 1029 Gene3D - 890 1029 - -
Rops2g01340 1029 Pfam Response regulator receiver domain 895 1021 IPR001789 GO:0000160
Rops2g01340 1029 Gene3D - 107 159 - -
Rops2g01340 1029 Gene3D CHASE domain 160 389 IPR042240 -
Rops2g01340 1029 Pfam His Kinase A (phospho-acceptor) domain 443 506 IPR003661 GO:0000155|GO:0007165
Rops2g01340 1029 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 716 IPR003594 -
Rops2g01340 1029 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Rops2g01340 1029 CDD PRTases_typeI 843 922 IPR000836 -
Rops2g01340 1029 SUPERFAMILY CheY-like 742 870 IPR011006 -
Rops2g01340 1029 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 509 IPR036097 GO:0000155|GO:0007165
Rops2g01340 1029 ProSiteProfiles Response regulatory domain profile. 746 868 IPR001789 GO:0000160
Rops2g01340 1029 SMART CHASE_2 156 357 IPR006189 -
Rops2g01340 1029 PANTHER TWO-COMPONENT HISTIDINE KINASE 90 1019 - -
Rops2g01340 1029 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Rops2g01340 1029 SMART HKATPase_4 555 718 IPR003594 -
Rops2g01340 1029 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 713 IPR036890 -
Rops2g01340 1029 Gene3D - 411 506 - -
Rops2g01340 1029 PRINTS Bacterial sensor protein C-terminal signature 643 657 IPR004358 GO:0016310|GO:0016772
Rops2g01340 1029 PRINTS Bacterial sensor protein C-terminal signature 702 715 IPR004358 GO:0016310|GO:0016772
Rops2g01340 1029 PRINTS Bacterial sensor protein C-terminal signature 661 671 IPR004358 GO:0016310|GO:0016772
Rops2g01340 1029 PRINTS Bacterial sensor protein C-terminal signature 678 696 IPR004358 GO:0016310|GO:0016772
Rops2g01340 1029 CDD HATPase_EvgS-ArcB-TorS-like 560 716 - -
Rops2g01340 1029 FunFam Histidine kinase 4 415 506 - -
Rops2g01340 1029 SMART REC_2 893 1022 IPR001789 GO:0000160
Rops2g01340 1029 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Rops2g01340 1029 FunFam Histidine kinase 4 160 389 - -
Rops2g01340 1029 Pfam CHASE domain 159 355 IPR006189 -
Rops2g01340 1029 SUPERFAMILY CheY-like 892 1026 IPR011006 -
Rops2g01340 1029 ProSiteProfiles Histidine kinase domain profile. 450 718 IPR005467 -
Rops2g01340 1029 ProSiteProfiles Response regulatory domain profile. 894 1026 IPR001789 GO:0000160
Rops2g01340 1029 Coils Coil 420 440 - -
Rops2g01340 1029 Gene3D - 507 718 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01340 Rops-Chr2 19117256 19124280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01340 1 1028 Miscellaneous Gene Families AT1G27320 67.779 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g01340 CHASE 4.7e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01340 K14489 - gmx:100776798 1790.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01340 2 19117256 19124280 Rops2g01340 2 19117256 19124280 ECH