Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01337 ATGACACCTGGTTACGAGTATGATATTAATGATCTGTTTCAAGAAGCTCAAAGGAGATGGCTGAAGCCCGCAGAAGTGATGCACATTTTGCAGAATCATGAAAAGTACCAATTCACCCAAGAGCCCCCAAAACAGCCAAAAAGTGGATCCCTATTTCTGTTTAACAGAAGAGTCCTGCGTTTCTTCCGTAAAGATGGTCATACCTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACATGAACGGCTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTATTATGCACATGGAGAGCAGAACCCTACTTTCCAAAGGCGGAGCTATTGGATGTTGGATCAGGCATATGATCATATTGTTCTCGTGCATTACAGAGAAACAAGTGAGGGAAAGCCCAGTTCGGGACCTGGCACCCAGTTGTCACCAGGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCTCATATTTTGCTCAGAACCCAGGGTCAACATCCATTCCTGATGATTCATATGAACCTACTCAGAGTTTTTCCAGTCCTGGATCTGCAGAAGTTACCTCTGATATATTCATTGTGAACAATGGAATGGGTCACTTGGATGGAACAGATGCTGAATCAGGAACCTCAACTGAATTTGAGATGACTCGAGCTTTGCGCCGATTGGAGGAGCAGTTAAGTTTGAATGAGGACACCTTTCAAGATATTCCTCCCTTCTGCAATGAGCACAAAACTTCACATGATTCAAACCCTCAGCACCATCATGGGGTGATCTACGAACAAGTAAAATCTGCAGCTTTCTCTGGATCAGATGATCAGGGGCTATTTAATGATGGATATAATGGAAAGCAAGGTGATAGTGGTCAATATTATCATGAATTACCAGACCATGGTCGCCCTGATGGAAATGAAAAGGCTTTGTCTTGGACACAGATGCTGGAATCATCCGAGTCCTCATCCGCAGCCAAGTTACCCCAGAAAAATGTATACATGCCAGCTGGAAATCAGGAAAATTCACCATCTTCTAGAAGGGAACCAGTTTCCAACCAGGAAAATTGTCGCTGGCTAAACTTCAATAGTAATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGGCGTTGGTGGAGTCAAGCTTCCTCCATATTCTTCTATGGTAGAAACACAAGAAATTAATTCCGACTACTATACAACATTGTTTGACCAAAGTCAAATCGGAGCACCTCTGGATGCAGGTTCAAGCTTGACTGTTGCACAAAAACAGAAATTTAGGATTAAGGCAGTCTCCCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTCATCATTGTTGGGTCTTTTCTCTGTCCTACCTCGGATTCTGCCTGGGCCTGTATGTTTGGGGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATCTGCTGTGAAGCTCCATCTCACGTTCCTGGAAAGGTTACTTTGTGTATTACTTCTGGAAACCGAGAATCCTGCAGTGAAGTCAGAGAGTTTGAGTATAGCAGTAAGACCAATAGTTGCACCCGATGTACATCATTGGAAACAGAAGCCACAAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAGATGCTCCTTTCTGCATCAACCGTAAAGAATGACAACATAGAATCTGGAAATTCTTTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTGGTTGGCAGTGGAACTTCATCTAGTACTATTGATTTGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAGCTGTGGCTTTCTAGCAGATCCCAGGAAGTAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAATTGTGGTGTGAATATAAATTTCCGTGACATCAATGGCTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTTGCTTATAGCTTCTGGTGCATCTGCTGGGGCAGTGACGGATCCAAGTGCACAAGATCCAATCGGTAAAACTGCTGCATCAATTGCTGCTAGCCATGGGCATAAGGGACTAGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATCTTTCATCGCTTACACTCGAAGAGAGCGAGCTATCTAAAAGTTCAGCTGAGATTCAAGCAGATATAACTGTTAGTAGTGTCCCCAATGAAAATATTGCCGCCAATGATGATCAGGCATCGCTCAAAGATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTAGATCACATTCTTTTAGAAATAGGAGAGTAAGAGAAGCAGCTGCTGTTATAGATGGATATGGTATCAATGCAGGTGGCATTGGTAACATTCAAGAGCTTTCTGCTATGTCAAAACTTGCCTTCCGGAACTCGCGTGAGTATAATTCAGCTGCCTTATCAATTCAGAAAAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAACATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCGGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAAGGAGCTGGTTTACGAGGCTTCCGACAAGACATGGAGATTAATGAAGATGAAGATATTCTCAAGATGTTCCGAAAACAGAAAGTAGATGTAGAAATTGAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCTCCTGATGCTCGTCAGCAATATCATCGGATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCAGGTACGAGTGAAGAAACATCATTATCAACTTCCTTGGGGAATGCTTTCAACATGGAAGATGATTTCTTTCAATTTCCCTAG 2955 0.4352 MTPGYEYDINDLFQEAQRRWLKPAEVMHILQNHEKYQFTQEPPKQPKSGSLFLFNRRVLRFFRKDGHTWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDQAYDHIVLVHYRETSEGKPSSGPGTQLSPGSSSAFSQSPSSYFAQNPGSTSIPDDSYEPTQSFSSPGSAEVTSDIFIVNNGMGHLDGTDAESGTSTEFEMTRALRRLEEQLSLNEDTFQDIPPFCNEHKTSHDSNPQHHHGVIYEQVKSAAFSGSDDQGLFNDGYNGKQGDSGQYYHELPDHGRPDGNEKALSWTQMLESSESSSAAKLPQKNVYMPAGNQENSPSSRREPVSNQENCRWLNFNSNNAGNSVFSLPQGVGGVKLPPYSSMVETQEINSDYYTTLFDQSQIGAPLDAGSSLTVAQKQKFRIKAVSPEWGYASETTKVIIVGSFLCPTSDSAWACMFGDVEVPVEIIQDGVICCEAPSHVPGKVTLCITSGNRESCSEVREFEYSSKTNSCTRCTSLETEATRSPEELLLLVRFGQMLLSASTVKNDNIESGNSFIKQKADDDSWSHIIEALLVGSGTSSSTIDLLLEELLKDKLQLWLSSRSQEVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILNCGVNINFRDINGWTALHWAARFGREKMVALLIASGASAGAVTDPSAQDPIGKTAASIAASHGHKGLAGYLSEVALTSHLSSLTLEESELSKSSAEIQADITVSSVPNENIAANDDQASLKDTLAAVRNATQAAARIQAAFRSHSFRNRRVREAAAVIDGYGINAGGIGNIQELSAMSKLAFRNSREYNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQDMEINEDEDILKMFRKQKVDVEIEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEETSLSTSLGNAFNMEDDFFQFP* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01337 984 CDD IPT 424 507 - -
Rops2g01337 984 MobiDBLite consensus disorder prediction 270 284 - -
Rops2g01337 984 FunFam Calmodulin-binding transcription activator 2 828 876 - -
Rops2g01337 984 MobiDBLite consensus disorder prediction 133 184 - -
Rops2g01337 984 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 956 - -
Rops2g01337 984 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Rops2g01337 984 ProSiteProfiles Ankyrin repeat region circular profile. 653 679 - -
Rops2g01337 984 SUPERFAMILY Ankyrin repeat 622 714 IPR036770 -
Rops2g01337 984 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Rops2g01337 984 Gene3D - 828 877 - -
Rops2g01337 984 SMART ANK_2a 653 682 IPR002110 GO:0005515
Rops2g01337 984 SMART ANK_2a 692 721 IPR002110 GO:0005515
Rops2g01337 984 MobiDBLite consensus disorder prediction 270 303 - -
Rops2g01337 984 Gene3D Immunoglobulins 418 513 IPR013783 -
Rops2g01337 984 Gene3D - 531 718 IPR036770 -
Rops2g01337 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 875 IPR027417 -
Rops2g01337 984 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Rops2g01337 984 Pfam Ankyrin repeats (3 copies) 635 713 IPR002110 GO:0005515
Rops2g01337 984 MobiDBLite consensus disorder prediction 129 184 - -
Rops2g01337 984 Pfam IPT/TIG domain 425 507 IPR002909 -
Rops2g01337 984 FunFam Calmodulin-binding transcription activator 2 418 511 - -
Rops2g01337 984 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Rops2g01337 984 SMART CG_1_2 12 130 IPR005559 GO:0003677
Rops2g01337 984 Coils Coil 943 963 - -
Rops2g01337 984 FunFam Calmodulin-binding transcription activator 4 isoform A 535 718 - -
Rops2g01337 984 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Rops2g01337 984 SMART iq_5 770 792 IPR000048 GO:0005515
Rops2g01337 984 SMART iq_5 828 850 IPR000048 GO:0005515
Rops2g01337 984 SMART iq_5 851 873 IPR000048 GO:0005515
Rops2g01337 984 MobiDBLite consensus disorder prediction 330 349 - -
Rops2g01337 984 ProSiteProfiles IQ motif profile. 852 877 IPR000048 GO:0005515
Rops2g01337 984 Pfam IQ calmodulin-binding motif 831 849 IPR000048 GO:0005515
Rops2g01337 984 Pfam IQ calmodulin-binding motif 854 873 IPR000048 GO:0005515
Rops2g01337 984 SUPERFAMILY E set domains 425 507 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01337 Rops-Chr2 19099055 19112866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01337 5 978 CAMTA Transcription Factor Family AT1G67310 52.734 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops2g01337 CG-1 2.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01337 K21596 - gmx:100786880 1536.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01337 2 19099055 19112866 Rops2g01337 2 19099055 19112866 ECH
Rops11g03697 11 70535433 70546081 Rops2g01337 2 19099055 19112866 PCT