Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01294 ATGTCTCACCTCAAAACCCTATCTTCTTCCTCTTGTTCCCTCTCCTTATTGTTCTCTGTTATCATCATCATCACCACCACCATCGTTACCGCCGATGACGCCGCCGTGATGTCGAAGCTTCTAGAATCTCTAACCTCACCACCTTCAGGCTGGTCTTCGAAAACTCCATTCTGCAAATGGGATGGAATCAAGTGCGATTCATCAAACAGCGTGACTAGCATAAGCATCGCTTCTAAGTCCCTCACCGGAACACTCCCTTCCGATCTGAACTCACTCTCCAAACTCACCTCTCTCTCTCTTCAAGACAACGCCTTCTCCGGCGCTGTTCCTTCCCTCGCCAATCTCTCTTCCCTCCAAACCGCCTACCTCGGTCGCAACAACTTTACCTCCGTCCCTTCATCCGCATTTTCCGGCCTCACTTCCCTTCAGACACTCAGCCTTGGCAACAACCCTAACCTCTCACCGTGGACATTCCCCACCGAGTTGACTCAGTCCTCTAACCTCAACGACCTCGACCTCGGAACCGCAGGTGTCACCGGTCAGTTACCGGACTTCTTCGACCAATTCCCCAGTCTCCAGAACCTTCGTCTTTCTTACAACAACCTCACCGGAGGTTTGCCGAAATCCCTCGCCGCTTCTTCAATAACCAATTTATGGCTTAACAACCAGCAAACCGGATTATCAGGCACCATTGATGTGATTGGCAACATGACACAGTTAGCTCAGGCGTGGCTTAACAAGAACCAGTTTACTGGTCCAATTCCCGACTTGTCGAAATGCAAGAACCTGTTTGATCTTCAGTTAAGGGATAATCAGTTAACCGGTGTGGTTCCGGGTTCTTTGACGGGTCTTTCGAGTTTGCAGAATGTTTCTTTGGATAACAATGAACTTCAGGGGCCGATTCCGGTGTTTGGTAAAGGTGTGAAGCTAACTCTTGATGGGATCAATAGTTTTTGTTTAGACAAGCCAGGACCTTGTGATTCAAGGGTGATGGTTTTGCTTCAAATTGCTGAGGGATTTGGGTATCCCATTCGGTTGGCAAATTCGTGGAAAGGGAATGATCCTTGTAATGGTTGGAGTTTTGTTGTGTGTAGTGGAGGGAAGATTACAACGTTGAATTTTGCAAAGCAGGGTTTGCAGGGAACAATTTCGCCTGCATTTGCCAATTTGACTGATTTGAGGACTTTGTATCTCAATGGGAATAATTTGACTGGTTCTATACCTGAGAGCTTGACCACTCTGTCTCAGCTTGAGACTCTTGATGTGTCTGATAATAACCTCTCTGGGGAAGTTCCGAAATTCCCATCAAAGGTGAAGTTGGTAACTGCAGGTAATGCTTTGCTTGGGAAAAATCCTGGTTCTGGAGGTGGAGCAAGTGGAAGCACTCCATCTGGGGGTTCTGCACCTGGTGGAAGTTCATCTGAATCGGGAAATGGTACTTCATTGAAACCGGGTTGGATTGCTGCTATAGTGATTATTGCTATGTTTTGTGTTGCGGTTGTGGTGTTTGTGGCTTGCAAATGTCGTTCCAAAAACCAGCATTGGAAATTTGGAAGGGTTAATGATCCCGGAAGTGGGAAAGGAAACAGTAAACTTGATGTGATGAGTGTTTCTAATGGATATGGTGGTGTTCCTAGTGAGTTGCAAAGCCAGAGTAGTGGTGACCTTCGTGTTTTTGAGGGTGGAAATGCTACGATTTCGATCCAAGTCCTTCTACAAGTGACGGATAATTTCAGTGAGAACAACATTATAGGAAGGGGAGGGTTTGGAGTTGTTTATAAAGGGGAGTTGCCTGATGGAACTAAAATTGCTGTCAAGAGGATGCAATCTGTTGCAATGGGAAACAAAGGGATGAATGAGTTCCAAGCAGAAATTGCAGTTCTTAGTAAGGTTAGGCATAGACATTTGGTTGCTCTTTTAGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACATTAACACAGCATCTGTTTGAATGGTGTGAGCATGGGTATAATCCTTTGACATGGAAACAAAGGTTAGCAATAGCTTTGGATGTAGCTCGGGGGGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTGAAACCCTCAAACATACTATTAGGGGATGACATGAGAGCAAAGGTTTCAGATTTTGGGTTGGTTAAAAATACACCAGATGGGAAGTATTCTGTGGAGACAAGATTGGCTGGAACTTTTGGATATCTTGCACCAGAATATGCAGCAACTGGAAGAGTGACAACCAAAGTGGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACCGGTAGAAGGGCCTTGGATGATACTTTGCCTGATGAAAGGTCTCACTTGGTTACGTGGTTTCGTAGGGTTCTAATTAACAAGGAAAATATTCCAAAGGCAATTGATCAAACTCTCGACCCTGATGAGGAAACCATGAAGAGCATATATACAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTGTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTACCCATGAAGAAGAAGACAGCTATGGCATTGACCTTCAGATGAGCCTTCCTCAAGCACTACAAAGGTGGCAAGCCAATGAAGGCACTTCAACAATATTTAATGACATGTCCTTATCACAAACCCAATCAAGCATCCCCTCTAAACCTGCAGGATTTGCAGATTCCTTTGGTTCAACAGATTGCCGGTAA 2781 0.4545 MSHLKTLSSSSCSLSLLFSVIIIITTTIVTADDAAVMSKLLESLTSPPSGWSSKTPFCKWDGIKCDSSNSVTSISIASKSLTGTLPSDLNSLSKLTSLSLQDNAFSGAVPSLANLSSLQTAYLGRNNFTSVPSSAFSGLTSLQTLSLGNNPNLSPWTFPTELTQSSNLNDLDLGTAGVTGQLPDFFDQFPSLQNLRLSYNNLTGGLPKSLAASSITNLWLNNQQTGLSGTIDVIGNMTQLAQAWLNKNQFTGPIPDLSKCKNLFDLQLRDNQLTGVVPGSLTGLSSLQNVSLDNNELQGPIPVFGKGVKLTLDGINSFCLDKPGPCDSRVMVLLQIAEGFGYPIRLANSWKGNDPCNGWSFVVCSGGKITTLNFAKQGLQGTISPAFANLTDLRTLYLNGNNLTGSIPESLTTLSQLETLDVSDNNLSGEVPKFPSKVKLVTAGNALLGKNPGSGGGASGSTPSGGSAPGGSSSESGNGTSLKPGWIAAIVIIAMFCVAVVVFVACKCRSKNQHWKFGRVNDPGSGKGNSKLDVMSVSNGYGGVPSELQSQSSGDLRVFEGGNATISIQVLLQVTDNFSENNIIGRGGFGVVYKGELPDGTKIAVKRMQSVAMGNKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWCEHGYNPLTWKQRLAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVSDFGLVKNTPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTLPDERSHLVTWFRRVLINKENIPKAIDQTLDPDEETMKSIYTVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTTHEEEDSYGIDLQMSLPQALQRWQANEGTSTIFNDMSLSQTQSSIPSKPAGFADSFGSTDCR* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01294 926 SUPERFAMILY L domain-like 41 438 - -
Rops2g01294 926 FunFam receptor protein kinase TMK1 543 655 - -
Rops2g01294 926 FunFam receptor protein kinase TMK1 656 873 - -
Rops2g01294 926 MobiDBLite consensus disorder prediction 451 479 - -
Rops2g01294 926 FunFam Leucine-rich repeat receptor-like kinase 328 451 - -
Rops2g01294 926 Pfam Leucine rich repeat N-terminal domain 332 365 IPR013210 -
Rops2g01294 926 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Rops2g01294 926 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01294 926 MobiDBLite consensus disorder prediction 904 926 - -
Rops2g01294 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Rops2g01294 926 FunFam Receptor-like kinase TMK4 31 324 - -
Rops2g01294 926 Gene3D Ribonuclease Inhibitor 32 322 IPR032675 -
Rops2g01294 926 CDD STKc_IRAK 584 857 - -
Rops2g01294 926 PANTHER OSJNBA0070M12.3 PROTEIN 15 926 - -
Rops2g01294 926 Gene3D Ribonuclease Inhibitor 328 451 IPR032675 -
Rops2g01294 926 Pfam Protein tyrosine and serine/threonine kinase 581 852 IPR001245 GO:0004672|GO:0006468
Rops2g01294 926 Gene3D Transferase(Phosphotransferase) domain 1 656 879 - -
Rops2g01294 926 Pfam Leucine rich repeat 370 427 IPR001611 GO:0005515
Rops2g01294 926 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Rops2g01294 926 SMART LRR_typ_2 260 283 IPR003591 -
Rops2g01294 926 SMART LRR_typ_2 139 160 IPR003591 -
Rops2g01294 926 SMART LRR_typ_2 92 114 IPR003591 -
Rops2g01294 926 SMART LRR_typ_2 189 212 IPR003591 -
Rops2g01294 926 SMART LRR_typ_2 390 414 IPR003591 -
Rops2g01294 926 SMART LRR_typ_2 115 138 IPR003591 -
Rops2g01294 926 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Rops2g01294 926 Gene3D Phosphorylase Kinase; domain 1 541 655 - -
Rops2g01294 926 SUPERFAMILY Protein kinase-like (PK-like) 566 881 IPR011009 -
Rops2g01294 926 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01294 926 MobiDBLite consensus disorder prediction 455 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01294 Rops-Chr2 18584058 18587921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01294 71 854 Receptor kinase-like Gene Family AT5G07280 34.240 1.35e-99 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops2g01294 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01294 - - gmx:100286794 1348.57