Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01283 ATGGATGGAGCGCCTCTTTCCGCCGCCGCCGCCGCCGCCGGGAGTGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTATGAAATGGTGGACGATTCCTCCACGGACGACATCGTTTCGTGGAGCTCTACCAACAACAGCTTTGTCGTTTGGAACCCTCCAGAGTTCGCTCGGCTTCTTCTCCCTACCTATTTCAAGCACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTATGGATTTCGAAAGATAGATCCTGAGCGATGGGAGTTTGCGAATGATGATTTTATAAAGGATCAAAAGCATCTTCTTAAGAATATACACCGCAGGAAACCTATCCACAGTCACAGTCATCCTCCAGGTTCTCTCGTAGATCCAGAAAGGGTAGCATTTGAGGAAGAAATAGATAAACTTTCACGTGAGAAAACTTCTATTGAATCCAATATTTTTAACTTCAAACAACATCAGTCAACAGCAAAGCTTCGACTGGAAGATTTTCAGCGGCGACTAGATGATGTGGAGAAGAGGCAGAAAAATTTGCTGAACTTATTTGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACATGCAGCCAGTTGCCGAAAGTAGCTTTGTTGACAATCCTAGCAATTTCAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCAAATAAGCTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTATCACGCAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACAGAAGAAGCTGTCGGAAGGAGAACAGAGAGGAGTGCAGGCAAGAACAGCTCTTGCATTCGCACCTGAAACCTTAGAGCTTGCAGATACTGGGGCATCTTTTACTTTTAAGATGGATTCATGTTTATCAAGAAGAGCAACAACTGCTGAGAGCCCAAAACTGCACTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCTTGCCAACTAAATTTAACTCTGGCATCTTGTCCATTCCCAGTCAACAGAAATTCATACTCGGCCAGGTCACCTCAAATAGACTGTCAGGAAATTGGCAAATTGGCAGAATCAAGAATTCATCATGCCAATGGTAAAGAATCTGATAATGGTGTTTCCTCAAACCAAAATGCAGCTAATGAGGCTACCAATTTAGCTCCCTCACAGGAGGCTCCAAGTAACAACCAAGTTAACCCAGCTGCTCCAGGTAGAGTGAACGATGTGTTCTGGGAACAGTTCCTTACAGAAAGACCAGGCTGTTCAGATAATGAAGAGGCAATATCCAACTATCGAGCCAACCCATGTGATGAGCCAGAGGAAGGGCAGTCAGTTCATGGCATCTCTAGAAACATTAAGAACATGGATCAGCTCACACTTTGA 1464 0.4392 MDGAPLSAAAAAAGSGGPAPFLLKTYEMVDDSSTDDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERVAFEEEIDKLSREKTSIESNIFNFKQHQSTAKLRLEDFQRRLDDVEKRQKNLLNLFEKALQNPTFVEHLSRKIESMDLSAYNKKRRLPQVDHMQPVAESSFVDNPSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEGEQRGVQARTALAFAPETLELADTGASFTFKMDSCLSRRATTAESPKLHSLEPSSEEGDSHISCQLNLTLASCPFPVNRNSYSARSPQIDCQEIGKLAESRIHHANGKESDNGVSSNQNAANEATNLAPSQEAPSNNQVNPAAPGRVNDVFWEQFLTERPGCSDNEEAISNYRANPCDEPEEGQSVHGISRNIKNMDQLTL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01283 487 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Rops2g01283 487 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 FunFam Heat shock transcription factor 1 14 111 - -
Rops2g01283 487 MobiDBLite consensus disorder prediction 266 290 - -
Rops2g01283 487 Coils Coil 128 148 - -
Rops2g01283 487 Gene3D - 15 111 IPR036388 -
Rops2g01283 487 MobiDBLite consensus disorder prediction 459 487 - -
Rops2g01283 487 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01283 487 Coils Coil 156 190 - -
Rops2g01283 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 280 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01283 Rops-Chr2 18465133 18468075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01283 21 487 HSF AT4G13980 56.568 2.26e-174 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops2g01283 HSF_DNA-bind 3.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01283 K09419 - gmx:100816484 838.95