Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01274 ATGCGGTGTTATGGCTTAACAATCCCTGGAAGCGATCATCGCTTCTGCGTCCCCACGATAACTCCGGTGTCGACCAGGCCCACGAGGCCCATGACCCGAATAACAATCGGGTTAGGGTTCCCTAAGGCCAAGGCCACCCTCAACGACGGTTTTGTGGCGGAGCAGGCTTCGGAATTGAGCTTCTACCAGCTTTTGGGCATACCCGAATCCGGGTCCGTGACGGATATAAAGCATGCGTACAAGCAATTGGCCCGAAAGTATCACCCGGATGTGTCTCCACCGGGTCGGGTTGAGGAGTATACGAAGAGGTTTATTCAAGTGCAGGAGGCTTATGAGACCTTATCTGATCCAACGAGGAGAGCTATGTATGATAGAGACATGGCAAGGGGAATTCAATTCGCTTTCAGTGCTCGTAGACGCTATAATCACCATGATCAGGTGAATGAACAAAAAAGTGAATGGAAAGCTCGTTGGCAATCTCAACTATCTGAGCTGAAGAGAAGAAGTAAGAGCAAGGATGCTGGAGGGAATATGTCATGGGCAGCTAGAATGCGCCAGCAGAGTGGTGAATCATCAAGTGAATTATGA 588 0.4983 MRCYGLTIPGSDHRFCVPTITPVSTRPTRPMTRITIGLGFPKAKATLNDGFVAEQASELSFYQLLGIPESGSVTDIKHAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPTRRAMYDRDMARGIQFAFSARRRYNHHDQVNEQKSEWKARWQSQLSELKRRSKSKDAGGNMSWAARMRQQSGESSSEL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01274 195 PRINTS DnaJ domain signature 80 95 IPR001623 -
Rops2g01274 195 PRINTS DnaJ domain signature 99 119 IPR001623 -
Rops2g01274 195 PRINTS DnaJ domain signature 62 80 IPR001623 -
Rops2g01274 195 PRINTS DnaJ domain signature 119 138 IPR001623 -
Rops2g01274 195 SMART dnaj_3 59 119 IPR001623 -
Rops2g01274 195 Pfam DnaJ domain 61 124 IPR001623 -
Rops2g01274 195 CDD DnaJ 61 116 IPR001623 -
Rops2g01274 195 MobiDBLite consensus disorder prediction 165 195 - -
Rops2g01274 195 MobiDBLite consensus disorder prediction 181 195 - -
Rops2g01274 195 FunFam Chaperone protein dnaJ 20, chloroplastic 45 156 - -
Rops2g01274 195 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Rops2g01274 195 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 54 192 - -
Rops2g01274 195 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Rops2g01274 195 Gene3D DnaJ domain 51 164 IPR036869 -
Rops2g01274 195 SUPERFAMILY Chaperone J-domain 56 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01274 Rops-Chr2 18300615 18303288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01274 62 124 C2H2 Transcription Factor Family AT1G74250 42.424 5.60e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01274 - - gmx:100101903 300.056