Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g01257 | ATGGCAGGCGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTTTTGAGGTCCGTAGAAGAAGCTCAAGAACACGCCGAACTCACTTCTCACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCATTTGCACCACTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGACACACTGAGTTTGTTGATAAGACTTCCGAGGCAGCGAAACCAATTGGTTTAGAGGCTCCAAAGGTCGATTCAACGTCACAGGAACCTCTTGCTGCAACCACTGATCAAAATGAAGATACAGAAATGGTTGTTCCAGAAGTTGACAAAAAGATACTCGAGGAACTTGAATCAATGGGTTTTACAACAGCAAGAGCGACACGGGCACTTCATTATTCTGGTAATGCTGGCCTTGAGGCTGCTGTAACATGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCATGGTACCCGCCAACACCAAAGTTGAGGCTCCTAAGCCTTCTCTTACCCCAGAAGAACTGAAGGCCAAACAGCAGGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGATAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGAATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAGGAAGAGAATGAGAGAAAAAGGTTGTTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAAGGCTAGAGAGAAAATCAGGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGAAGACTTGGATTGCCTCCAGAAGAGCCTTCAGCAGCCAAACCTTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCCACAAAAACTGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAAAGCATTCCAAACTCTTCTAACTTACGTGGGGAATGTTGCCAGAAATGCTGATGAAGAAAAATTCAGGAAGATTCGTCTTACTAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGCATTGAATTCCTGGAAATTTGCGGGTTTGAGAAGATCGAAGGTGGTGAATTTTTGTTTTTGCCTCGGGACAAGGTTGAGATGGCAGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG | 1239 | 0.456 | MAGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLICTTCSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPIGLEAPKVDSTSQEPLAATTDQNEDTEMVVPEVDKKILEELESMGFTTARATRALHYSGNAGLEAAVTWIVEHENDPDIDQMPMVPANTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKIMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERKAREKIRQKLEEDKAERRRRLGLPPEEPSAAKPSTVVEEKKSFLPVRPATKTEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNADEEKFRKIRLTNQTFQERVGALKGGIEFLEICGFEKIEGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL* | 413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g01257 | 412 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
| Rops2g01257 | 412 | SUPERFAMILY | PUG domain-like | 295 | 408 | IPR036339 | - | |
| Rops2g01257 | 412 | SMART | uba_6 | 114 | 152 | IPR015940 | - | |
| Rops2g01257 | 412 | Pfam | PUB domain | 319 | 389 | IPR018997 | - | |
| Rops2g01257 | 412 | Pfam | UBA/TS-N domain | 115 | 150 | IPR015940 | - | |
| Rops2g01257 | 412 | SMART | PGNneu | 322 | 385 | - | - | |
| Rops2g01257 | 412 | MobiDBLite | consensus disorder prediction | 255 | 272 | - | - | |
| Rops2g01257 | 412 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 112 | 153 | IPR015940 | - | |
| Rops2g01257 | 412 | CDD | UBA_PUB_plant | 112 | 160 | - | - | |
| Rops2g01257 | 412 | PANTHER | F13M7.16 PROTEIN | 1 | 412 | - | - | |
| Rops2g01257 | 412 | MobiDBLite | consensus disorder prediction | 255 | 287 | - | - | |
| Rops2g01257 | 412 | MobiDBLite | consensus disorder prediction | 171 | 208 | - | - | |
| Rops2g01257 | 412 | Gene3D | - | 298 | 402 | - | - | |
| Rops2g01257 | 412 | MobiDBLite | consensus disorder prediction | 177 | 208 | - | - | |
| Rops2g01257 | 412 | CDD | PUB_UBA_plant | 306 | 412 | - | - | |
| Rops2g01257 | 412 | Coils | Coil | 183 | 215 | - | - | |
| Rops2g01257 | 412 | Gene3D | - | 114 | 160 | - | - | |
| Rops2g01257 | 412 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
| Rops2g01257 | 412 | SUPERFAMILY | UBA-like | 95 | 166 | IPR009060 | GO:0005515 | |
| Rops2g01257 | 412 | Coils | Coil | 218 | 263 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g01257 | Rops-Chr2 | 18053272 | 18061463 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g01257 | 107 | 412 | C2H2 Transcription Factor Family | AT1G04850 | 81.553 | 8.27e-154 | 436 |