Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01245 ATGCGAGCTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCTGGTTCTTCTGCCAACAATGAGGGAACTGGTAACAATTTAGCTCCTTCGCGACCGGTTTATGTTCCTCCACATCTGAGGAACCGCCCGCCATCAGCAGAATCCCCGGCACCGACATATAGTGGCCCTACTTCTGGCTCTGGTTCCGGTACTGGTGCTGGTAATGCTGGATCACATTGGGCTCCACCTAGAAATGATTATCGTTCTGGGTATGGTGGTGGTGGCCGTGGAAGTGGATGGGGAAATAGAACTGGTGGTTGGGATCGTGGCAGGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATAATGACGAACAGGCATTTAGTGAGCAAGAGAGTACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCACTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATCGACTTAGGTGAAGCACTAAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACACCTGTTCAGAGGCATGCGATTCCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAAACAGCTGCTTTCTGTTTCCCCATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTACCCTCTTGCACTTGTTCTCTCACCAACCAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGAGGAGCACCAATAAATCAACAGCTGCGAGATCTTGAGAGAGGGGTGGACATTCTTGTTGCTACTCCTGGAAGACTGGTAGATTTGTTGGAAAGGGCTAGAGTTTCACTGCAGATGATCCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAAAAAATGGACATGCCTCCACCAGGTTTCAGACAAACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTATCCAACGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGCACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAGCACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACAATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCGTTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCTACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTAGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCTACTGCATTCTTTAATGACAACAATTCATCGCTAGCTAGGGCTTTAGCAGATCTGATGCAAGAATCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGATCTTCTTTCGGTGGAGGGAGGAACCGCCGATCAGGAGGTGGCCGGTTTGGTGGCCGTGACTTTCGAAGAGAGGGCTCTTTTAGTAGAGGCACTTCAGATTACTACAATGCAGGAAACAGCAGTGGTGGATATGGGGCCTCAGGTGGGTATTCTGGAGGGTATGGTCCTGGAGTCACTAGTGCATGGGACTGA 1848 0.4724 MRASWADLAANSAAENAGPGSSANNEGTGNNLAPSRPVYVPPHLRNRPPSAESPAPTYSGPTSGSGSGTGAGNAGSHWAPPRNDYRSGYGGGGRGSGWGNRTGGWDRGREREVNPFGDEDNDEQAFSEQESTGINFDAYEDIPVETTGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEKMDMPPPGFRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGAQGKQALTLVFVETKKGADALEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQESNQEVPAWLSRYAARSSFGGGRNRRSGGGRFGGRDFRREGSFSRGTSDYYNAGNSSGGYGASGGYSGGYGPGVTSAWD* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01245 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Rops2g01245 615 MobiDBLite consensus disorder prediction 555 615 - -
Rops2g01245 615 SMART helicmild6 430 511 IPR001650 -
Rops2g01245 615 Gene3D - 112 374 IPR027417 -
Rops2g01245 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Rops2g01245 615 MobiDBLite consensus disorder prediction 581 598 - -
Rops2g01245 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Rops2g01245 615 MobiDBLite consensus disorder prediction 1 125 - -
Rops2g01245 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 528 IPR027417 -
Rops2g01245 615 MobiDBLite consensus disorder prediction 15 32 - -
Rops2g01245 615 FunFam Probable ATP-dependent RNA helicase DDX4 119 374 - -
Rops2g01245 615 MobiDBLite consensus disorder prediction 52 72 - -
Rops2g01245 615 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Rops2g01245 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 550 - -
Rops2g01245 615 CDD SF2_C_DEAD 384 520 - -
Rops2g01245 615 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Rops2g01245 615 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Rops2g01245 615 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Rops2g01245 615 SMART ultradead3 175 387 IPR014001 -
Rops2g01245 615 MobiDBLite consensus disorder prediction 565 579 - -
Rops2g01245 615 MobiDBLite consensus disorder prediction 104 118 - -
Rops2g01245 615 Gene3D - 375 554 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01245 Rops-Chr2 17885668 17893905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01245 154 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 8.57e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01245 K11594 - gmx:100795756 994.956