Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01224 ATGGGTAAGGAATATCAAAACCAAAAGGCCAAAGAGGACAGACTCAGAGAGAAACACTTGATAAAGAGCAAGTCCAAGTTTCTTGGGGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGCACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTTCCTCCTTCGAGGTTCAAACACTCGCACCAACTTCTCTACTCATGGCATAGCTACCAATTCTCCTATATCTCTCAAACTAAGAAACCTCCTTGATCGTAAAGCCATCTCAAATCAAATTCAAAACCAGTCCACTATGATAAGTCCCACTTTCCAAAGTGCTGCTAATGCAGCTAGTCCAAATGGTAGTACCATTAATAGCATAATGGTCATGGAAGACAACTCTGCATGTAGTAGTGAAGGTAAGTCTTTGTTTTGGGTTCAGAACCAAGTCTCTGAAAATCCATATGGACTAGATATGAATATGATCAACTGCTCAATGGGTTTTGCTCCAAATGCATCACAGTTTGATTATTCTTGGCCATTACCCCAACAAGGGATTAGTGAGTTACCAATACCAAAAGATGTTTTGAATGTCGAAAGACAATTGTCAGCCTCGGTATATGCCATGAATGAGTGCTACGTGGAGAATACATATGACTCTCAGTATGAATATGATGTTAACTATCCTCTCTCCCACTTGTTCTGCTTCACTTGA 747 0.4123 MGKEYQNQKAKEDRLREKHLIKSKSKFLGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFSTHGIATNSPISLKLRNLLDRKAISNQIQNQSTMISPTFQSAANAASPNGSTINSIMVMEDNSACSSEGKSLFWVQNQVSENPYGLDMNMINCSMGFAPNASQFDYSWPLPQQGISELPIPKDVLNVERQLSASVYAMNECYVENTYDSQYEYDVNYPLSHLFCFT* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01224 248 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Rops2g01224 248 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Rops2g01224 248 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 144 - -
Rops2g01224 248 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Rops2g01224 248 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Rops2g01224 248 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Rops2g01224 248 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Rops2g01224 248 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Rops2g01224 248 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Rops2g01224 248 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01224 Rops-Chr2 17624991 17625737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01224 6 248 AP2-EREBP Transcription Factor Family AT5G19790 37.407 1.11e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g01224 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01224 K09286 - gmx:100809046 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01224 2 17624991 17625737 Rops2g01224 2 17624991 17625737 ECH