Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01198 ATGGATCGGTCAAGAAGCAAAGGAAGTGGTGAGATATTGGATCATGTTGATGAAAGGGTGGATGAGAATTTGAGCCATTTGGTTGAAGGAGTTGCAATTGATGCAGGAGCAGCACGTAGATTGGGTGACAGTGTTAGTGTAAGTGGGGAAAATGGAACTTCAGAAGAGATTTGCAATGATCTTGGATTGAATAAGGAGCTAAAGGAGGGATCTCAAGAAGTTAAGGGTCCTAACATGAGTGACACACAAAATATCAATGATACATTGCAAGGGGTTGATCAAGGAACTAGTTATAATTCAAGTAATTCAGTTAATGGGGAAGTACTTGAGACCTGTGTGGTAATAAATTCCTCTGCTCAGATTGAGTCTGTCAATGGAGATAATAGGAAATTGGAAGCAAAAGCTAATGAATCAGGGTTGAGCAAGTTATCCATTAAAGCATCAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGCAAAAGGTTTAGTGAGAATTTGGATGGTGAAATGGTCTGTAGGATTTGCCATCTGGCTTCTGGGCAACCATTAGAGGCAACTGCTGTTGGAACTCCAAATAGTGCTAATAATAGTACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGTGTTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTATGGATGTTACTGATAATGGATTTATGGAAGAGTGGAATGAAAGTAGATTCATCGACAGTGGAGATACCTCATCCCGCAGATTTGGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGGTATGTACCATGAAGCCATGAAGTTTCATTACAAGAAAGTTACCAGCTTGGCTAGTTATGGTCACATTGTTTCCTTATTGCATTCTTTGGATTGGAGTGCGTGTGGTGTTCTGAGATATGTATATTGA 1014 0.4063 MDRSRSKGSGEILDHVDERVDENLSHLVEGVAIDAGAARRLGDSVSVSGENGTSEEICNDLGLNKELKEGSQEVKGPNMSDTQNINDTLQGVDQGTSYNSSNSVNGEVLETCVVINSSAQIESVNGDNRKLEAKANESGLSKLSIKASKGVSETDKNSCVIDINRGSCKRFSENLDGEMVCRICHLASGQPLEATAVGTPNSANNSTGLIMLGCACKDELGVAHSHCAEAWFKIKGNRLCEICGETAKNVMDVTDNGFMEEWNESRFIDSGDTSSRRFGGCWRGQPFCNFLMACLGMYHEAMKFHYKKVTSLASYGHIVSLLHSLDWSACGVLRYVY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01198 337 SUPERFAMILY RING/U-box 178 246 - -
Rops2g01198 337 MobiDBLite consensus disorder prediction 75 101 - -
Rops2g01198 337 PANTHER ZINC FINGER, RING-CH-TYPE 75 295 - -
Rops2g01198 337 Pfam RING-variant domain 202 243 IPR011016 GO:0008270
Rops2g01198 337 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Rops2g01198 337 MobiDBLite consensus disorder prediction 70 101 - -
Rops2g01198 337 SMART ringv_2 180 244 IPR011016 GO:0008270
Rops2g01198 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 255 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01198 Rops-Chr2 17164970 17168763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01198 161 306 C3H Transcription Factor Family AT5G05830 35.948 1.25e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01198 - - gmx:100791129 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01198 2 17164970 17168763 Rops2g01198 2 17164970 17168763 ECH