Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01181 ATGTTTGGCACAAGGTTGTTGATCAACCCAGACATTCCAGAGGTTTTAGAATTAAAAAACAGGCTGCCAGTTCCAAATTCTGAGTCCTCTCAAGGCTTGAGTGTCATATTTGAAACTCCACGGTTTTCTATGGAGGAGGATTTACTGAAAGCAACTCCAAACAAATCTATAGAAGAATTAAAGGATTGCAAGGATTCTGGATTTTATGTTGTTTTGTCTACTATCAACTGTGTTACCAATGGTCCGGATTGGTGGTATATAGCTTGCAAGTGTAACAAAGCTGTCCATCCTGATTCTGGGATGTATTATTGTGAAAGGTGTTACTGTCACGTCGTTGATGTAACACCAAGGTATCGACTTAAGCTTAGAGTTGTGGATGACACAGATAATGCAACATTTGTTATGTGGGATAGGGATGACACTATGTTGCTTAACAAGTCATGCTCCCAGTTGCTTGATTCTCTTAAGAAACCTGATAGGACTATGGGTATCTCTTATGGAGATACCTCTTTAAGTGCTCATTTGCAACATTTGCAGTCTCCTTGCAGCAAGGCTGACAACTCAGAACCTCTATTGACTCCTAACAAAAGGACTCTTGAAGTGTTTGATGAAATTGCTGATGAGGCATTTGTTGCTGAATTTGGACCATCCATTGGACATTTCACAAAATTTATTACCTATGGTGGTGATTCATTTGATGTCAAATTTGTTATGTCATCAAATGGTGGCTTCTTCACCAATGGTTGGACTAATTTTCTGGCACACTGCTCTTTACTTAATCTCCCTGAGATCAATATGAAATACCATGGTCTTTTATGGTTCAAATTTGACAAAGATGATCACATAAAAGCCAAAACAGAGATCAATCTGGCTTCCATGCATGAGATCAATTTGACTCGAATAAAATCTTTGCATGAGAAAAGGAAAAGAAAAAACACAGCCATTACAGATGAGAAACTACTAGCTGTTTCAAATGACAAAGCCCCATGGTATGCTGACTATGTGAATTACTTGGTTTGTGGAATTCTCCCACCTGACACAAACTATCAACAGAAAAAGAAAATTTTCTCTGATCTTAAGTATTTTGTGTGGGATGAGCCATATATTTTCCGGAGAGGTGTTGATGGCATTTATCGAAGATGTGTTGCGGAGGATGAAGTCCAAGATATTCTGAGTTGTTGTCATTCTTCATCTTATGGAGGACATGCTAGTTCCTCGAAGATAGCAACCAAAGTCCTTCAATCTGGGTTCTTTTCGCCACATATTTTCAAAGATGCAAGGAACTTTGTAAGTTCTTGTGACAATTGCCAAAGAACTGGGAACATATCCAGGAGACATGAGATGCCTTTGAATGGTATACTGGAGGTGGAAATCTTTGATGTTTGGGGAATTGATTACATGGGACCGTTTCCACCATCTTGCAGCAATAAGTATATTCTTGTAGCAGTGGATTACGTCTCAAAATGGGTAGAAGTTGTACCATCCCCAACAAATGATTCTAAAACTGTGATGAAGTTGTTCAAAAAGATAATATTTCCAAGGACTGCTTTCAAGACTCCCATTGGGATGTCTCCGTTCCAGTTGATTTATGGCAAGCCTTGTCATCTTCCAGTTGAATTGGAACACAAGGCTTATTGGGCCATCAAGCTTTTGAACTTTGACATGAAGACAGCTGGAGAAAAGAGGAAGCTTCAACTTAATGAGCTAGAAGAGTTAAGATTCGATGCATATGTACATGCTAAGACTTACAAAGAACAAACCAAACGATGGCATGATAAACACATATTGCGTAGGGAGTTCAAAGAAGGAGATCTTGTTTTACTCTTCAACTCAAGATTGAAGCTATTTCCAGGAACGCTCAAGTCTAGATGGTCTGGACCATTCCAAGTCAGACGAGTATTTCCTTATAGTGCTATTGAAATTTGGAGTGAATCGAATGGATCCTTCAAGGTCAATGGACAACGGTTGAAGAAATATCTTGTAGATGAACCCATTGAAGCAAGCATGAAGTATAAGCTTCTTCAACCAAATGATTCAAACTGA 2043 0.3886 MFGTRLLINPDIPEVLELKNRLPVPNSESSQGLSVIFETPRFSMEEDLLKATPNKSIEELKDCKDSGFYVVLSTINCVTNGPDWWYIACKCNKAVHPDSGMYYCERCYCHVVDVTPRYRLKLRVVDDTDNATFVMWDRDDTMLLNKSCSQLLDSLKKPDRTMGISYGDTSLSAHLQHLQSPCSKADNSEPLLTPNKRTLEVFDEIADEAFVAEFGPSIGHFTKFITYGGDSFDVKFVMSSNGGFFTNGWTNFLAHCSLLNLPEINMKYHGLLWFKFDKDDHIKAKTEINLASMHEINLTRIKSLHEKRKRKNTAITDEKLLAVSNDKAPWYADYVNYLVCGILPPDTNYQQKKKIFSDLKYFVWDEPYIFRRGVDGIYRRCVAEDEVQDILSCCHSSSYGGHASSSKIATKVLQSGFFSPHIFKDARNFVSSCDNCQRTGNISRRHEMPLNGILEVEIFDVWGIDYMGPFPPSCSNKYILVAVDYVSKWVEVVPSPTNDSKTVMKLFKKIIFPRTAFKTPIGMSPFQLIYGKPCHLPVELEHKAYWAIKLLNFDMKTAGEKRKLQLNELEELRFDAYVHAKTYKEQTKRWHDKHILRREFKEGDLVLLFNSRLKLFPGTLKSRWSGPFQVRRVFPYSAIEIWSESNGSFKVNGQRLKKYLVDEPIEASMKYKLLQPNDSN* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01181 680 Gene3D - 347 439 - -
Rops2g01181 680 Gene3D - 455 516 IPR036397 GO:0003676
Rops2g01181 680 Gene3D - 45 179 IPR012340 -
Rops2g01181 680 CDD RPA1_DBD_C 55 153 IPR047192 -
Rops2g01181 680 SUPERFAMILY Ribonuclease H-like 458 514 IPR012337 -
Rops2g01181 680 PANTHER ENDONUCLEASE-RELATED 306 633 - -
Rops2g01181 680 Pfam Replication factor-A C terminal domain 69 156 IPR013955 -
Rops2g01181 680 SUPERFAMILY Nucleic acid-binding proteins 55 156 IPR012340 -
Rops2g01181 680 Pfam Integrase zinc binding domain 384 439 IPR041588 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01181 Rops-Chr2 16859129 16884547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01181 4 128 Core DNA Replication Machinery Family AT5G08020 31.618 9.82e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01181 - - cqi:110690804 417.927