Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01180 ATGGAAAGTAAATTCAACAACCCATATATGAATGAACAAGAAGACACCGATGTAGCTCAAGAAAACATTGCCGATTCCCCTCCTTCCACCGCATTTAACATTGATGGCTTGGTCAATTCACCCACTTCTTCAGTTAAGAGAAGCAGGCGAGCCATTCAGAAAAGGGTAGTGCAAATTCCAATCAAGGAGCCGGAAGGGTCAAGGCTAAAAGGAGAGAGCAATACTCCACCATCTGATTCATGGGCATGGAGAAAGTACGGTCAGAAACCCATCAAAGGTTCCCCATATCCCAGAGGGTACTACAGGTGTAGCAGTTCAAAAGGTTGTCCGGCGAGGAAACAAGTGGAGAGGAACCGTGTGGACCCCACCATGCTCGTCGTAACCTACTCCTCCGAACACAACCACCCTTGGCCTGTTTCAAGAAACCACAATAGACCCATTTCCAAGAAGCCCGAACCCGACCCGGTCGAACCGGAGGAGAAGTTTCCTGACCTGGGCGGAGGAGGAGACGAGTTCGGGTGGTTGGGGGAGATGGATACGACGTCGTCCGTTCTCGAAAGCCCGATCATGGCGGAGGACGATGCTGACGTGGCATCAATGTTGTTGCCGATGAGGGAAGAGGACGAGTCGCTCTTCGCCGACCTCGGGGAGCTGCCCGAGTGCTCCACGGTGTTCCGGCACGGCTTACTTGACGACCGGCGGCGGTTCACGGCGCCATGGTGTGGGACCACAACTTGA 738 0.5352 MESKFNNPYMNEQEDTDVAQENIADSPPSTAFNIDGLVNSPTSSVKRSRRAIQKRVVQIPIKEPEGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERNRVDPTMLVVTYSSEHNHPWPVSRNHNRPISKKPEPDPVEPEEKFPDLGGGGDEFGWLGEMDTTSSVLESPIMAEDDADVASMLLPMREEDESLFADLGELPECSTVFRHGLLDDRRRFTAPWCGTTT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01180 245 ProSiteProfiles WRKY domain profile. 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01180 245 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 223 IPR044810 GO:0003700
Rops2g01180 245 SMART WRKY_cls 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01180 245 MobiDBLite consensus disorder prediction 1 47 - -
Rops2g01180 245 MobiDBLite consensus disorder prediction 133 161 - -
Rops2g01180 245 Pfam WRKY DNA -binding domain 79 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops2g01180 245 MobiDBLite consensus disorder prediction 1 114 - -
Rops2g01180 245 SUPERFAMILY WRKY DNA-binding domain 75 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g01180 245 Gene3D WRKY domain 67 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops2g01180 245 MobiDBLite consensus disorder prediction 145 161 - -
Rops2g01180 245 FunFam WRKY transcription factor 65 58 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01180 Rops-Chr2 16845890 16847426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01180 15 227 WRKY Transcription Factor Family AT1G29280 57.143 6.90e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops2g01180 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01180 - - gmx:100793777 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01180 2 16845890 16847426 Rops2g01180 2 16845890 16847426 ECH