Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01171 ATGGAACCCAGAAATAAGAGATCTCGACCCAATCGTTTTCCAATTCCTTTTCCAGTCAAGAACAACTACGAAAAGAACTTACCTGTTGCAATGGTATCTTCTTGCTTGAATTTAAAAAAAAAGTCTATTATTTTCAATGTTGGAGGTGGAAGGACTTGGAAATTTGGTTTATACCATCATGAAAGCCGTGGTTCTGAAGCCAGGATATCCACTGGATGGAAATCCTTTTTCGCGGATCACCAATTAAAAGCAGGGGACAAAATTGTTGTTGAGGTTGCTGATCCATTAAAGAACCACTTCAATGCTGACATTGTTAGAGTTTCAATGCAATCAACTCCTTCCAAAAATGCTAGAAAATCAAGGATGGAAGACCTGAAACGAAAATGTTCAAACACAAAAGAAAATCAAGGTATCTCTATGCAACCAGTTAATAGTAAATATCCTTCAAAAAGATCTCCTTTATCTTCCATTGAAAATGAGTTAGGAGATGGGGATGTTGACTCCGCCAATGATTACCAATTTGACCATGATATATATAAATTAAGTGAGCAACAAGCATGTTTGGATTTTGGAGATTCTTCTTTTCGTTGCTCTTTTTGTCAAGCATCTGTTTGGTATGAAGAGAGATATGAAAAATCAAAGTCTTCTAAAAACCCTGATTTTTCTATTTGTTGTATGAAAGGAAAGGTACAATTGCCGTTTTTGCAAAAACCCCCAATACTTTTGGGGAATCTTATGCATGGAATTGATCATAGAAGCTCTAATTTTATTCAAAACATTCGGCAATACAACAACATATTTGCATTCACATCTATAGGAGGCAAGGTTGAGACTTCATTAAACAATGGAACTGCAGCTCCACAGTTCATTCTTAGTGGGCAAAACTTTCATAGAATTGGATCTTTACTTCCAATTGATGGACAACTTCCCAAGTTTGCTCAACTATATATATATGACACCCAAAATGAGATATCAAACAGAATGAAGCCCTTCAGCTCAAATGATACAAATGCAAAATTAGATGCTTCTTTGGTTGAAGACTTAAAAGTTATGATTGATGGACATAACGTCTTAGCTCAGAGCTTTAGAAGAATCTGTGGAACTTCTCATATGCAAATTCTAAAGTTGTTCATGGTGGAGACCTGA 1146 0.3578 MEPRNKRSRPNRFPIPFPVKNNYEKNLPVAMVSSCLNLKKKSIIFNVGGGRTWKFGLYHHESRGSEARISTGWKSFFADHQLKAGDKIVVEVADPLKNHFNADIVRVSMQSTPSKNARKSRMEDLKRKCSNTKENQGISMQPVNSKYPSKRSPLSSIENELGDGDVDSANDYQFDHDIYKLSEQQACLDFGDSSFRCSFCQASVWYEERYEKSKSSKNPDFSICCMKGKVQLPFLQKPPILLGNLMHGIDHRSSNFIQNIRQYNNIFAFTSIGGKVETSLNNGTAAPQFILSGQNFHRIGSLLPIDGQLPKFAQLYIYDTQNEISNRMKPFSSNDTNAKLDASLVEDLKVMIDGHNVLAQSFRRICGTSHMQILKLFMVET* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01171 381 MobiDBLite consensus disorder prediction 133 160 - -
Rops2g01171 381 Coils Coil 115 135 - -
Rops2g01171 381 MobiDBLite consensus disorder prediction 133 156 - -
Rops2g01171 381 ProSiteProfiles B3 DNA-binding domain profile. 27 108 IPR003340 GO:0003677
Rops2g01171 381 SMART B3_2 13 108 IPR003340 GO:0003677
Rops2g01171 381 SUPERFAMILY DNA-binding pseudobarrel domain 25 102 IPR015300 -
Rops2g01171 381 CDD B3_DNA 27 91 IPR003340 GO:0003677
Rops2g01171 381 Pfam B3 DNA binding domain 25 94 IPR003340 GO:0003677
Rops2g01171 381 Gene3D - 9 109 IPR015300 -
Rops2g01171 381 PANTHER DNA BINDING PROTEIN-LIKE 235 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01171 Rops-Chr2 16727208 16736910 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops2g01171 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01171 - - vun:114184753 251.906