Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01163 ATGGCTTCTGGGGCTATAATCTCGTCGCTGCGGCGTCGGAGGTCGCCGTCGCTGGAGGCGTTTCTTGCTCCGGTGGAGCTGAATGAGGCGGCGCTGATGGAGGTCGCCGGAGACCTTGTCGGTTGCTTCTCCGGTCACCCCTTCCCCTTCCAACGCAGAAACTCACGTTCCCTTATCAGAAAGGTGAAGATTCTACAGTTACTGTTAGAATGCTTAAAGGACTTTTCCGGCGCCGGCGCCACCCTTCCCTCCACGGCGGTGCTATGCCTGAAGGAGCTTTACCTTCTTTTCTACCGTTCCAAGATTCTCCTCGACCATTGCTCACAATCTAGTACACTATGGCTCTTGCTTCAGAACCATTCAATTTCTGGTCACTTTCATGATTTGAACAAAGAAATTTCCACCCTTTTGGATGTTTTTCCCATAAACGACGTCTTTTACCTCAGTGATGACGTTAGGGAACAGATACAGTTGTTGAAGGAACAAACTAAGAAGTCTAAGTTGTTTATAGAAGAGAAAGATGAGTCCCTTAGGAGAAGGTTCTTCTGGTTTCTAGAAGAGTTTGAGAGTGGGAGGGTTCCTGATTCTTCAGAATTGAGGTCTTTCTATGTTGATGAGTTGAAGATTCTTGATTCCGATAGTTGTAGGGAAGAAGTTGAAGCCTTGGAGGAACAGATTGTTAACCACCATGGCGATGTTGAACCAACGGTTTCAGTGCTTAATGGGATGGTGGCTATAACAAGGTATTGCAGGTTTTTGCTGTTTGGATTTGAGGAGGAAGATTTGGAGAATGGGAATGGGAAGAAGGGTAACAAAAAGAGGTTGATATCTCAAGAAATTGGGGAAACGTTTTTAACTGTTCCTAAGGACTTTTGTTGTCCAATAACATTGGATTTGATGCGTGATCCTGTGATAATTTCGACTGGACAAACTTATGATCGAAGGCCTATATCAAGGTGGATGGATGAAGGGCATTGTACTTGTCCGAAAACAGGGCAGATGCTTGCTCATAATCGAATTGTTCCTAATCGTGCTCTTAGGAATTTGATCATGCAGTGGTGCAATGCACACGGGGTGCCTTATGATCCACCAGAGGTGATTGATGCATCAGCTTGTCCTTCCAAAGCTGCTATTGAGGCTAATAGAGGGACTGCAACACTTCTAATTCAGCAGCTAGCTGAAGGGTCACAGGCTGCAAAGACTGTGGCTGCTAGGGAGATAAGGTTGCTAGCAAAAACCGGGAAAGAAAACCGTGCCTTCATCGCAGAAGCAGGGGCAATTCCTTATCTTAGGAATTTGCTTTCATCTCCTAACATTGTTGCACAGGAGAATTCTGTGACTGCATTGCTCAACCTGTCAATTTTTGAGAGAAACAAAAGTAGGATCATGGAGGAGGAAGGGTGTCTTGGATCAATAGTTGAGGTGTTGAGATTCGGGCACACGACAGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGAATATAAGAAAAGAATTGCAGATAATGAAGGAGCTGTTGTGGCATTGACAATGTTGTTGCAAGAGGGTACCCCAAGAGGAAAGAAGGATGCCATAACAGCAATATTTAATCTTTCCACACACACCGAGAATTGTTTGAGAATGATAGAGGCAGGTGCAGTAACAGCTCTAGTTGGGGCGTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTAGGCAACCTATTGGGGCCAAAGCAGTGGTGAGTGATGAAGCAGCAGTGGCTGGATTAATAGGAATGATGCGTTGTGGAACACCAAGAGGAAAAGAGAATGCAGTTGCAGCATTGCTGGAATTGTGCCGGAGTGGTGGTGCAGCTGCAACCGAAAGGGTGATTAGGGCACCAGCTTTGGCCGGATTACTTCAAACACTGCTTTTTACAGGGACAAAGAGAGCAAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGAGTAGGGTATGCATTTGCTAGCAATTCAGCTCAAACTAGGGATACAAGCTTTGTTGGTGATGTTTCAGTTCAAGTGTCCATTTCTGTCCCTGTTTTATAG 2127 0.456 MASGAIISSLRRRRSPSLEAFLAPVELNEAALMEVAGDLVGCFSGHPFPFQRRNSRSLIRKVKILQLLLECLKDFSGAGATLPSTAVLCLKELYLLFYRSKILLDHCSQSSTLWLLLQNHSISGHFHDLNKEISTLLDVFPINDVFYLSDDVREQIQLLKEQTKKSKLFIEEKDESLRRRFFWFLEEFESGRVPDSSELRSFYVDELKILDSDSCREEVEALEEQIVNHHGDVEPTVSVLNGMVAITRYCRFLLFGFEEEDLENGNGKKGNKKRLISQEIGETFLTVPKDFCCPITLDLMRDPVIISTGQTYDRRPISRWMDEGHCTCPKTGQMLAHNRIVPNRALRNLIMQWCNAHGVPYDPPEVIDASACPSKAAIEANRGTATLLIQQLAEGSQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNIVAQENSVTALLNLSIFERNKSRIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHEYKKRIADNEGAVVALTMLLQEGTPRGKKDAITAIFNLSTHTENCLRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVSDEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQTRDTSFVGDVSVQVSISVPVL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01163 708 FunFam RING-type E3 ubiquitin transferase 286 361 - -
Rops2g01163 708 Gene3D - 385 660 IPR011989 -
Rops2g01163 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Rops2g01163 708 SMART arm_5 414 454 IPR000225 GO:0005515
Rops2g01163 708 SMART arm_5 499 539 IPR000225 GO:0005515
Rops2g01163 708 SMART arm_5 540 578 IPR000225 GO:0005515
Rops2g01163 708 SMART arm_5 456 497 IPR000225 GO:0005515
Rops2g01163 708 CDD MLKL_NTD 52 164 - -
Rops2g01163 708 FunFam RING-type E3 ubiquitin transferase 364 679 - -
Rops2g01163 708 Pfam Armadillo/beta-catenin-like repeat 415 453 IPR000225 GO:0005515
Rops2g01163 708 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Rops2g01163 708 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Rops2g01163 708 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Rops2g01163 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Rops2g01163 708 SUPERFAMILY RING/U-box 275 361 - -
Rops2g01163 708 PANTHER U BOX DOMAIN-CONTAINING 53 665 - -
Rops2g01163 708 CDD RING-Ubox_PUB 288 337 IPR045210 -
Rops2g01163 708 SUPERFAMILY ARM repeat 382 662 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01163 Rops-Chr2 16632107 16634924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01163 1 708 U-box Gene Family AT1G29340 66.667 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01163 - - gmx:100797462 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01163 2 16632107 16634924 Rops2g01163 2 16632107 16634924 ECH
Rops2g01163 2 16632107 16634924 Rops11g00760 11 10915734 10918376 PCT