Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01160 ATGTGGAAAATTCTCTACGCGTTTCAACGAGGAAGAAAGGATCCCAATAATTCGAAGCACCCAGAAACGCAAAGAACCCTCTCTCTCTCTGTGGGTTTTCTGGGGTTTTCTCTTGGTCCAGATTTGAGAAAGAAAAAAAGGGGATTTTTTTGGGGGTTCTGGGATGCCCCAGTATTCATAAGGCAGCTGAACACATATGGATTTAGGAAAAGTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGTCAACCACATCTTATGACGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTACAGAATCTCCAATCACAAGCACCTCTAACGGAGTCTGAAAGGCAGAGTTTAAATGAGGAAATAGAGAAGCTTAAGCAAGATAAAGAACGACTCCTTATGGAGTTACAGAGATATCAACATGAGTGGCAAACATATGAGATACAAATACATTGCTCAAAAGATCGGTTAGAAAAGTTGGAGCAGATGCAACAAAAGATGGTCTCTTCTGTTTCTCAAATATTGCACAAACCTGTGATTGCTTTAAATCTCTTGCCACTGACAGAAACCATGGATAGAAAACGGAGGTTACCAAGAAGTGGTGGCTACTTTAATGATGAAGCTAGCATTGAAGATGCTATTGAAACTTCCCGAATTTTACCCAGAGAAAATGCAGAGGGTACCTCTGTTTTGACATTAAACATGGAGCGATTGGATCAGCTTGAGTCATCAATTGTATTTTGGGACTCTGTTGCACACGAAGTCGCTGACACCTTGGTTTCCATTCATTCAAACATGGAGTTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTGTGCAACTAGATGTTGAAGTTCGGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTTCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGCGGGAATCACCACTGCAGCAATTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAGGATCCCGGTGCATCGGAAGCACAGGAAGCGCAGTCAGAAAGAAAGGATTATAATGGCAAAAAAAATGAAGGAAAACCTAGTGACCTTGGCAGATTTTGGTGGAATATGCGGAATGCAAATAATCTTCCAGAACAGGTTGGGCATGTTGGTCAAGCAGAGAAAACTTAA 1194 0.4154 MWKILYAFQRGRKDPNNSKHPETQRTLSLSVGFLGFSLGPDLRKKKRGFFWGFWDAPVFIRQLNTYGFRKSDPEQWEFANDDFVRGQPHLMTNIHRRKPVHSHSLQNLQSQAPLTESERQSLNEEIEKLKQDKERLLMELQRYQHEWQTYEIQIHCSKDRLEKLEQMQQKMVSSVSQILHKPVIALNLLPLTETMDRKRRLPRSGGYFNDEASIEDAIETSRILPRENAEGTSVLTLNMERLDQLESSIVFWDSVAHEVADTLVSIHSNMEFDESTSCADSLSISCVQLDVEVRPKSSGIDMNSEPAAASVPEPVASKEQPAGITTAAIGVNDVFWEQFLTEDPGASEAQEAQSERKDYNGKKNEGKPSDLGRFWWNMRNANNLPEQVGHVGQAEKT* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01160 397 MobiDBLite consensus disorder prediction 349 369 - -
Rops2g01160 397 Pfam HSF-type DNA-binding 59 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g01160 397 SUPERFAMILY "Winged helix" DNA-binding domain 59 97 IPR036390 -
Rops2g01160 397 Gene3D - 54 98 IPR036388 -
Rops2g01160 397 Coils Coil 105 146 - -
Rops2g01160 397 MobiDBLite consensus disorder prediction 297 318 - -
Rops2g01160 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 215 IPR027725 -
Rops2g01160 397 MobiDBLite consensus disorder prediction 344 374 - -
Rops2g01160 397 SMART hsfneu3 21 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01160 Rops-Chr2 16601778 16604014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01160 59 397 HSF AT4G18880 46.571 2.17e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops2g01160 HSF_DNA-bind 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01160 K09419 - gmx:100798004 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01160 2 16601778 16604014 Rops2g01160 2 16601778 16604014 ECH
Rops11g00762 11 10938231 10940118 Rops2g01160 2 16601778 16604014 ECH
Rops2g01160 2 16601778 16604014 Rops11g00762 11 10938231 10940118 PCT