Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01158 ATGGATGAGGATTCAGCAAGAAATGGAACACAAGAAGTAGTTTTAAATGTGAACAAGGATGCCTCCACAACATGTGAAGACTCAGGCAATCATGTCACTGCTTGTTTCTTGCAAAAGTTGGTAGCTGAGGTGGTGGGCACATATTTCTTGATATTTGCTGGTTGTGCTTCTGTGGTGGTGAACAAGAACAATGAAAATGTGGTAACACTTCCTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTGCTGGTTTACTCTGTTGGTCACATATCTGGTGCCCACTTCAATCCTGCTGTCACCATTGCTTTTGCCACCACCAGAAGGTTTCCCTTGAAACAGGTACCAGCTTATGTAGCAGCTCAGGTCCTTGGATCTACACTTGCAAGTGGAACTCTTAGACTAATATTTAGTGGCAAGCAAGACCAGTTTTCAGGAACACTCCCAGCTGGGTCTAATCTGCAAGCTTTTGTGATTGAATTCATTATCACTTTTTACCTTATGTTTATCATATCTGGGGTTGCCACAGATAATAGAGCAATTGGTGAGTTGGCTGGGATTGCCGTTGGGTCTACAGTACTATTGAATGTGATGTTTGCAGGGCCAATTACAGGGGCATCAATGAACCCAGCAAGAAGCATAGGACCTGCATTTGTACACAGTGAATATAGAGGAATATGGATATACTTGGTGTCTCCAATTCTGGGAGCTGTGGCTGGTGCATGGGTCTACAATATCATTCGTTACACGGACAAGCCAGTTCGTGAGATCACCAAGAGTGCTTCTTTCCTCAAAGGAGTAGCACGTAGTGGTGGTGGCTCCAGTTGA 828 0.4432 MDEDSARNGTQEVVLNVNKDASTTCEDSGNHVTACFLQKLVAEVVGTYFLIFAGCASVVVNKNNENVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFATTRRFPLKQVPAYVAAQVLGSTLASGTLRLIFSGKQDQFSGTLPAGSNLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHSEYRGIWIYLVSPILGAVAGAWVYNIIRYTDKPVREITKSASFLKGVARSGGGSS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01158 275 FunFam Aquaporin NIP1-1 2 257 - -
Rops2g01158 275 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Rops2g01158 275 PANTHER AQUAPORIN NIP2-1 23 264 IPR034294 -
Rops2g01158 275 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Rops2g01158 275 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops2g01158 275 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01158 Rops-Chr2 16531779 16533912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01158 11 275 Major Intrinsic Protein MIP AT5G37810 56.827 8.75e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01158 K09874 - gmx:100794883 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01158 2 16531779 16533912 Rops2g01158 2 16531779 16533912 ECH
Rops2g01158 2 16531779 16533912 Rops11g00776 11 11097712 11102597 PCT