Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01133 ATGGGAATTCAGGGTTTATTGCCGCAATTGAAATCGATAATGGTTCCAATTCACATCAAGGATTTGAATGGTTGTTCTGTGGCGGTAGACACCTATTCTTGGCTTCACAAAGGTGCCTTGTCTTGCAGCACTGAGCTCTGCAAAGGGATACCCACTTCCAGGCACATTGGGTATTGCATGCACAGAGTGAATTTGCTGCGCCATTTTGGTGTTAAGCCTATTCTAGTATTTGATGGAGGTCTTCTACCAATGAAGAGTGAACAAGAGAATAAGCGTGCCAGGGCGAGAAAGGATAATTTTGCACGTGCAGTTAAACACGAGTCAGATGGAAATTCTGCTGCTGCCTTTGAGTGCTACCAGAAAGCTGTGGATATTTCACCTCTGGTTGCGTGTGAACTAATTCAGGTATTGAAGCAGGAGAATGTGCATTATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGCAAACAGGTTGATGCAGTTATAACCGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAATCCTTGCCAGGTATGGGTCTCAAAAGGGCCCATGCAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTATGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTATGAGGAGTCATTCAAGAAGGCTATACTTACTTTCCAACATCAACGGGTTTATGATCCAATTAAAGAAGATATTGTCCATTTGTCTAATATTCCTGATGATATTGGTGACGATCATACCTTAACCTGGGATACACCCTTGCCAAAAAATATAGCACAGGGAATAGCAAAAGGGGATATTGATCCAATTACCAAAATGTCATTTGAGGGAGAGAATCTTAGTTCCAGATTGGCTATTGCAGGGACTCGTCAATTCAAATCTCTTCATTCTGAAAGTGTGAAAAAAAAGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCATGAAGCAAAAAGGAAATTCAGTGCACCTCGGATGTCACCCACTACTGCTAATCAAAGTACATTGGATTCCTCTTCTGTGAGTTCCCCAGAACACGAGACTTTAGAAGCTGCTGCTAGTGAAACAAAGAACTCTGATGCATCCATCGTTGACTCCGAGAATTGGGGCAGTGGTCCTCTTCCTAATAGCCATATTGAAAACAGTTTTGCCCCCAAAATTTCTCAGTTTATGGAATCTCCATGTCAAGTACCAATGGTGGGTGAGAAGAAAATTCCTGAACATACAATACTGCGACAGCCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTTGCAGAAGGAGCATGAGCACACAAATGTTGAAGACACAGTCGAAGGAATAACCAGGGAGGCAACAGGGAAGGTAATTGTAAGGAGTACTTATTTTCAGCACAAGCAAGAGCAGAAGGAGCATGAGCCCACAAATGTCGAAGACACAGTCGAAGGAAAAACCAGGGAGGCAACAGGAAAGATAATTGTAAGGAGTGCTTATTTTCAGCACAAGCATGCGCAGCAGGAGCATGAGCACACAAATGTCAAAGACACAGTCGAAGAAAAAACCAGGGAGGCAACAGGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAAGAATATTTGTAGCCAAGACACTGTTGAAGGAAAAACCATGGAGCCAACAAGAAAGGTAATTGTAAGCAGTGCTTATTTTCAGCACAAGCAAGTAGAAAAGAATGTTTGTGGTGAGATACAAGATCACCTGTCCTCTGGCATTTTCATTGATGAGAGAAACAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAGAGACTTGAAAAGGAAGATCTCCCCTATTGATCATATTCAAAGTGAAAATTTGCAGCCAAGGCAAATGCATCCTGCTTCACCTCCTCACAATAATGGTTTCTGTGATCACAATGTTGATGGACCATTTGCAGAGAATCATGCTGAAGAAGAAAAATTTGGGACAAATATTTCCCATCTAGGCCATTATTCAAAAATATCCGAGAAGTCTATCGAAAGATTTGAATCTCTAATGGCATCCTTTAGATACACTCCTGGCTCTCGTGTCAGTGGTCTCCGGGCTCCTCTAAAAGATGTTCGGAACACTCGCGATAACAGGCCAACCACTGTGGACTTCAAACAATATGCATGTGTGCCAAAGAAAACAAAACAAAAGACTAGTGTGGACATCGAACAATATGCATATGTGCCAAAAAATACAAAACAAAAGACTTGTTTGAACATCGAAGACTATGCATATGTGCCAAAAAGACAAAATAAAAGACTAACAGAATAG 2502 0.4089 MGIQGLLPQLKSIMVPIHIKDLNGCSVAVDTYSWLHKGALSCSTELCKGIPTSRHIGYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARARKDNFARAVKHESDGNSAAAFECYQKAVDISPLVACELIQVLKQENVHYIVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKRFKSYDKVLMHLRYSGVSVPPFYEESFKKAILTFQHQRVYDPIKEDIVHLSNIPDDIGDDHTLTWDTPLPKNIAQGIAKGDIDPITKMSFEGENLSSRLAIAGTRQFKSLHSESVKKKIDLPVQKNLLTKYFCFASHEAKRKFSAPRMSPTTANQSTLDSSSVSSPEHETLEAAASETKNSDASIVDSENWGSGPLPNSHIENSFAPKISQFMESPCQVPMVGEKKIPEHTILRQPRQPIHKPCLGLQKEHEHTNVEDTVEGITREATGKVIVRSTYFQHKQEQKEHEPTNVEDTVEGKTREATGKIIVRSAYFQHKHAQQEHEHTNVKDTVEEKTREATGKVIVRSAYFQHKQVEKNICSQDTVEGKTMEPTRKVIVSSAYFQHKQVEKNVCGEIQDHLSSGIFIDERNNAISDSDLCNNHLKNRDLKRKISPIDHIQSENLQPRQMHPASPPHNNGFCDHNVDGPFAENHAEEEKFGTNISHLGHYSKISEKSIERFESLMASFRYTPGSRVSGLRAPLKDVRNTRDNRPTTVDFKQYACVPKKTKQKTSVDIEQYAYVPKNTKQKTCLNIEDYAYVPKRQNKRLTE* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01133 833 SMART xpgn3 1 99 IPR006085 GO:0004518
Rops2g01133 833 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Rops2g01133 833 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Rops2g01133 833 FunFam exonuclease 1 209 281 - -
Rops2g01133 833 SMART xpgineu 138 208 IPR006086 GO:0004518
Rops2g01133 833 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Rops2g01133 833 MobiDBLite consensus disorder prediction 523 542 - -
Rops2g01133 833 FunFam Exonuclease 1, putative 1 207 - -
Rops2g01133 833 Gene3D - 209 281 - -
Rops2g01133 833 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Rops2g01133 833 MobiDBLite consensus disorder prediction 391 443 - -
Rops2g01133 833 Gene3D - 1 207 - -
Rops2g01133 833 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Rops2g01133 833 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Rops2g01133 833 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Rops2g01133 833 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Rops2g01133 833 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Rops2g01133 833 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Rops2g01133 833 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 335 IPR036279 -
Rops2g01133 833 MobiDBLite consensus disorder prediction 387 443 - -
Rops2g01133 833 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 493 IPR006084 -
Rops2g01133 833 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Rops2g01133 833 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01133 Rops-Chr2 16096934 16104376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01133 1 331 Core DNA Replication Machinery Family AT5G26680 25.215 2.05e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01133 K10746 - gmx:100798062 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01133 2 16096934 16104376 Rops2g01133 2 16096934 16104376 ECH