LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g01102	ATGTGTGTTTCTGCGGATTTCAAAATCATTCGTTTCAATTCTTCATTCACCGTTTTGGCTGCTATTATTGGAGTTGCAGGTTGCATAATTGTGATGGCAATGAATAATAGACGCTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGAAGGATTTATTGATTCAAAAAGATAATCGCTTATGTGCTGATTGTAATGCTCCTGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTCTATGCTTAAAATGTTGTGGTGTCCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCTGTGACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATTGAAGTTGGAGGCAATGCTTCTGCTAATTCAATTTATGAGGCCTATATTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGCAGCGTACAAAATTCATCCGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGCTTGCGCATTGTGTCAGGAAAAAGCAATCGTCAAACAAGTTTTTCCAAAAGGATTATGGATAAATTTAAAAGTACTAAAAGTTCACAGAATATGGAGGGAATGGTAGAATTTATTGGAATGTTGAAGGTGACAGTGATTAAAGGCACAGATTTAGCTATCAGAGATGTGATGACAAGTGATCCATATGTCATTTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTTAGAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGATCAATGGATTTGAAGGTATATGATCATGACTACTTGTCAGCTGATGATATAATGGGAGAAGCAGAGATTGATCTTCAGCCTCTGATAACATCTGCAATTGCATTTGGAGATGCTGGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCATGACAACGCACTCATAAATGATAGTATTGTCAATATAATTGATGGTAAGGTTAAACAAGAGATGTCAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCTCTTGACCATTAG	1086	0.3748	MCVSADFKIIRFNSSFTVLAAIIGVAGCIIVMAMNNRRLEFGRPVSSKRRLKDLLIQKDNRLCADCNAPDPKWASANIGVFLCLKCCGVHRSLGTHISRILSVTLDEWSNDEIDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRTKFIRSKYEHQEFLKPSLRIVSGKSNRQTSFSKRIMDKFKSTKSSQNMEGMVEFIGMLKVTVIKGTDLAIRDVMTSDPYVILKLGQQTVQTTVRKSNLNPVWNEELMLSVPQQFGSMDLKVYDHDYLSADDIMGEAEIDLQPLITSAIAFGDAGMFDDMQIGKWLKSHDNALINDSIVNIIDGKVKQEMSIKLQNVESGELDLELEWIPLDH*	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g01102	361	PRINTS	HIV Rev interacting protein signature	100	121	IPR001164	GO:0005096
	Rops2g01102	361	PRINTS	HIV Rev interacting protein signature	79	96	IPR001164	GO:0005096
	Rops2g01102	361	PRINTS	HIV Rev interacting protein signature	60	79	IPR001164	GO:0005096
	Rops2g01102	361	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	48	162	IPR001164	GO:0005096
	Rops2g01102	361	Gene3D	C2 domain	203	361	IPR035892	-
	Rops2g01102	361	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	203	361	-	-
	Rops2g01102	361	Gene3D	Arf GTPase activating protein	36	169	IPR038508	-
	Rops2g01102	361	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	203	359	IPR035892	-
	Rops2g01102	361	SMART	C2_3c	206	301	IPR000008	-
	Rops2g01102	361	FunFam	Arf-GAP with dual PH domain-containing protein 1	43	171	-	-
	Rops2g01102	361	Pfam	Putative GTPase activating protein for Arf	49	164	IPR001164	GO:0005096
	Rops2g01102	361	CDD	C2_ArfGAP	204	348	-	-
	Rops2g01102	361	ProSiteProfiles	C2 domain profile.	186	302	IPR000008	-
	Rops2g01102	361	Pfam	C2 domain	206	295	IPR000008	-
	Rops2g01102	361	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	43	360	IPR044518	GO:0005096\|GO:0005543
	Rops2g01102	361	SMART	arf_gap_3	49	170	IPR001164	GO:0005096
	Rops2g01102	361	CDD	ArfGap	51	157	-	-
	Rops2g01102	361	SUPERFAMILY	ArfGap/RecO-like zinc finger	48	165	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g01102	Rops-Chr2	15632720	15638235	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g01102	41	361	C2H2 Transcription Factor Family	AT4G21160	73.333	0.0	521

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g01102	K12486		-	gmx:100777084	568.155