Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01101 ATGACCTCTGCTCACGACGCTGCTGATAGCGAAGATGATCTGCAGCTGCAGTCAGAATCACAAATGCAGTCTTCATCTGCAAATGGAATTTCTGATCCAGGTATTGGTACCCAGGATATTCAATATGCAACACCTGGCCAGCTTGGAACCAGGCATCCTATGGTACCACCTGTGTACCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCCACAATCCTATAGTGGACAGCAAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCCGGTGTTCCTCTGCCAACTGATGCGGTTGAGGAGCCTGTATTTGTCAATGCAAAGCAATATCATGGGATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAATCTGAAAATAAAGCTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTGAAAAGAGCAAGAGGATGCGGTGGTCGGTTTCTGAATGCAAAGAAAAATGAGAATGAGCATAATGATGTGGCATCACCTGACATATCACAGTCCAACATCAATCTCAATTCAGATAAAAATGACCTTACTTCATCAGACAGGACATCCTAA 615 0.4374 MTSAHDAADSEDDLQLQSESQMQSSSANGISDPGIGTQDIQYATPGQLGTRHPMVPPVYPYPDPYYRSIFAPYDTQPYPPQSYSGQQMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKKNENEHNDVASPDISQSNINLNSDKNDLTSSDRTS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01101 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 203 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 MobiDBLite consensus disorder prediction 178 198 - -
Rops2g01101 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Rops2g01101 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 MobiDBLite consensus disorder prediction 1 49 - -
Rops2g01101 204 Gene3D - 108 169 - -
Rops2g01101 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Rops2g01101 204 MobiDBLite consensus disorder prediction 173 204 - -
Rops2g01101 204 MobiDBLite consensus disorder prediction 14 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01101 Rops-Chr2 15600196 15609223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01101 49 204 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.385 1.33e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops2g01101 CBFB_NFYA 6.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01101 K08064 - gmx:100499754 332.413