Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01099 ATGGCACTTTCTATGCACAGAGATTCATCAAACAAGCACATGGATTCTACCAAGTATGTGAGGTATACACCTGAGCAAGTGGAAGCTTTGGAGAGGGTGTATGCTGAATGTCCAAAGCCAAGTTCTTCCAGAAGGCAACAACTCATTAGGGAGTGCCCTATCCTTGCTAATATTGAACCAAGACAGATCAAAGTTTGGTTTCAGAATCGCAGATGTCGTGAGAAGCAGCGCAAGGAATCCTCTCGTCTGCAGACAGTGAATAGAAAGCTGTCTGCTATGAATAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATTCATGAAACAACAAGTACACACCGCATCTGCTGCTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCACCAACAGCAAATCCCGAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTTGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATAGGGATGAAGCCTGGTCCGGATTCTATTGGAATTGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCGGCACGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCCGAGATTCTTAAAGATCGTCCGTCATGGTATCGTGACTGTCGATGCCTCAATGTATTGAGCATAGTCCCCACAGGGAATGGGGGCACGATAGAGCTCATGTACATGCAGACTTATGCACCTACAACATTGGCAGCAGCGAGGGACTTTTGGACACTAAGATACACGACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCCTTGACTTCTTCAAGTGGTGGCCCCACAGGGCCTCCTACTTCAAACTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGACCCTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCATGTCGATTTAGATGTTTCGAGTGTTCCAGAAGTATTGAGGCCCCTCTATGAATCATCAAAATTCTTGGCTCAGAAATTGACTATTGCTGCCTTGCGACATGTAAGACAGATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGCGGGGGACGTCAGCCTGCTGTCTTGAGGACATTTAGTCAGAGACTCTGCAGAGGGTTCAATGATGCTGTCAATGGGTTTGTGGATGACGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACAATAGCCATAAACTCATCTCCAAACAAGTTTTTGGGCTCCCATTACAATACGTCAATGCTCCCAGCATTTGGAGGTGGGGTCCTGTGTGCGAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTCCTTTGCTTGTTCGTTTTTTGAGGGAGCATCGTTCAGAGTGGGCTGATTATGGGGTTGATGGATACTCTGCTGCATGTCTTAGGGCTAGTCCTTATACAGTTCCTTGTGCAAGACCTGTTGGCTTCCCCAGCAGCCAGGTCATTTTGCCACTTGCTCATACTGTTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATAGAAGGTCATGCATTTTCCCCTGAGGATGTGGCTTTGGCACGTGATATGTATCTACTGCAGCTGTGCAGTGGAGTTGATGAAAATTCAATTGGAGCATGTGCGCAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTATCTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATTCTAAAACAGAAGGTCCAGCTGCAACTAAGACATTGGATTTAGCATCAACACTGGAAATAGGATCTGGTAATGCCCGTCCAGCTGGGGAAGGTGATTTGAATAACTACAGCCTTAGGTCAGTCCTTACAATTGCCTTCCAGTTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGCTATGGCTCGCCAATATGTGCGTAGTGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTTCTCCTTCTCCATTCAGTACCCAGTTGGGGCCAAAGTCACTACCTGGTCCACCAGAGGCTCTTACTTTAGCACGATGGATCTGTAGAAGCTACAGAATCCATACCAGCACTGATCTTTTTAGAGTCGAGTCCACAGCTGGTGATGCAGTCTTGAAGCAACTTTGGCACCATTCAGATGCAATAATTTGCTGTTCTATACAAACAAATGCATCTCCAGTGTTCATCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTCGTTGCTCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTCTGCTTTGAATTCTCCAAGATAATGCAACAGGGATTTGCATATTTGCCAGCAGGAATATGTGTATCCAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATTGCATTCAAAGTTCTGGATGACCATGATTCCAATCACTGCCTGGCCTTCATGTTCATGAACTGGTCTTTTGTCTGA 2538 0.4614 MALSMHRDSSNKHMDSTKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILANIEPRQIKVWFQNRRCREKQRKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGFMKQQVHTASAATTDNSCESVVMSGQHQQQIPKTQHPQWDANNPAGLLAIAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSSGGPTGPPTSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVSSVPEVLRPLYESSKFLAQKLTIAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSHYNTSMLPAFGGGVLCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDGYSAACLRASPYTVPCARPVGFPSSQVILPLAHTVEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENSIGACAQLVFAPIDESFADDAILLPSGFRIIPLDSKTEGPAATKTLDLASTLEIGSGNARPAGEGDLNNYSLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVRSVQRVAMAISPSPFSTQLGPKSLPGPPEALTLARWICRSYRIHTSTDLFRVESTAGDAVLKQLWHHSDAIICCSIQTNASPVFIFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCFEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAFKVLDDHDSNHCLAFMFMNWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01099 845 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Rops2g01099 845 Coils Coil 83 107 - -
Rops2g01099 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 845 IPR044830 GO:0003700
Rops2g01099 845 SMART START_1 165 375 IPR002913 GO:0008289
Rops2g01099 845 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Rops2g01099 845 Pfam START domain 166 374 IPR002913 GO:0008289
Rops2g01099 845 Gene3D - 9 84 - -
Rops2g01099 845 SUPERFAMILY Bet v1-like 166 377 - -
Rops2g01099 845 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Rops2g01099 845 CDD homeodomain 18 78 IPR001356 GO:0003677
Rops2g01099 845 SUPERFAMILY Bet v1-like 413 600 - -
Rops2g01099 845 SMART HOX_1 15 81 IPR001356 GO:0003677
Rops2g01099 845 CDD bZIP 70 109 - -
Rops2g01099 845 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Rops2g01099 845 CDD START_ArGLABRA2_like 160 376 - -
Rops2g01099 845 Pfam MEKHLA domain 700 844 IPR013978 -
Rops2g01099 845 ProSiteProfiles START domain profile. 156 357 IPR002913 GO:0008289
Rops2g01099 845 Gene3D - 177 376 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01099 Rops-Chr2 15562248 15568744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01099 5 845 Homeobox Transcription Factor Family AT2G34710 78.343 0.0 1367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g01099 START 1.9e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01099 K09338 - gmx:100779499 1516.9