Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01083 ATGGAGATTCATTACAGTCAGAGTTACTTCGAGAAACGCCCCATCCTCAAGTCCAAGGCTCCCGCTGTTAAATGGGTCAAAGAATGGGTTCCTCAAGATGTTGCAACAACTGGGGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATACCTTAAAGGCTTTGAGAGAAAAGGAAAAAGAGCCAATAGTGCCTGAGCCAGAACCAGAACCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTACGATGGCTGTGGAAAGACATTCATCGATGCTGTTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAGGGATGTGGAAGGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCACTCATACAGGGGAGAGGGATTTTGTGTGTCCTTATGAAGGTTGTGGTAAGGCCTTCTCCTTGGATTTCAACTTAAAGTCTCACATGAGAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTACATCTTATCATGAAAAGAATGTGTCAATGGACATGGCAAAGTACACTCCACCTTCAGAGAAGCAAACAAAAATTGCTAAACCTTCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTACGAAGGGTGTGAAAAAGATTACATCCACGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCACATGTTTGATGAAAATGCTCAGTCCAATGCTGCTGCTGACAATGAAATGGATGAAGCAAGTGACCGTGGTGATGCCTATGGTGGGAAACGCTCAAATGGTAAAATTCAGAAGCAAAATAGGCCCAAACCAAACCTCAAGTTGCCTCCTTCCAAGATTGCAAAACCTAAAGGGTCCACTGCCACTCTAACTAAAAAACCTTGGCCTGTGAAAGATGAAACCTACTATGAAGAAGATAGCGAAGAAACTGAAGAGGATCGTGACAATGTTGAAGATGGTCGGAGATATGCAGGAGGAAACAATGAATATGACGATGAAGAAACAGAATATGAAGACTGA 1122 0.4287 MEIHYSQSYFEKRPILKSKAPAVKWVKEWVPQDVATTGGKCMLLKWVTEDTLKALREKEKEPIVPEPEPEPEPEPTTEVLFLCSYDGCGKTFIDAVALRKHSHIHGERQYVCHYEGCGRKFLDSSKLKRHFLTHTGERDFVCPYEGCGKAFSLDFNLKSHMRTHSQENYHICPYPDCGKRYAHEYKLKNHITSYHEKNVSMDMAKYTPPSEKQTKIAKPSSGGAYGSASSDRPYACPYEGCEKDYIHEYKLRLHLKREHPGHMFDENAQSNAAADNEMDEASDRGDAYGGKRSNGKIQKQNRPKPNLKLPPSKIAKPKGSTATLTKKPWPVKDETYYEEDSEETEEDRDNVEDGRRYAGGNNEYDDEETEYED* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01083 373 FunFam Zinc finger transcription factor YY1 208 277 - -
Rops2g01083 373 Gene3D Classic Zinc Finger 81 106 - -
Rops2g01083 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 139 IPR013087 -
Rops2g01083 373 SUPERFAMILY beta-beta-alpha zinc fingers 229 257 IPR036236 -
Rops2g01083 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 169 IPR013087 -
Rops2g01083 373 FunFam zinc finger transcription factor YY1 167 198 - -
Rops2g01083 373 ProSitePatterns Zinc finger C2H2 type domain signature. 83 105 IPR013087 -
Rops2g01083 373 SUPERFAMILY beta-beta-alpha zinc fingers 121 174 IPR036236 -
Rops2g01083 373 Pfam Zinc finger, C2H2 type 140 164 IPR013087 -
Rops2g01083 373 SMART c2h2final6 110 134 IPR013087 -
Rops2g01083 373 SMART c2h2final6 170 195 IPR013087 -
Rops2g01083 373 SMART c2h2final6 81 105 IPR013087 -
Rops2g01083 373 SMART c2h2final6 234 259 IPR013087 -
Rops2g01083 373 SMART c2h2final6 140 164 IPR013087 -
Rops2g01083 373 MobiDBLite consensus disorder prediction 209 231 - -
Rops2g01083 373 ProSitePatterns Zinc finger C2H2 type domain signature. 142 164 IPR013087 -
Rops2g01083 373 FunFam Putative zinc finger protein 143 107 137 - -
Rops2g01083 373 SUPERFAMILY beta-beta-alpha zinc fingers 84 134 IPR036236 -
Rops2g01083 373 MobiDBLite consensus disorder prediction 272 373 - -
Rops2g01083 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 110 IPR013087 -
Rops2g01083 373 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Rops2g01083 373 FunFam Zinc finger protein 410 138 165 - -
Rops2g01083 373 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Rops2g01083 373 Gene3D Classic Zinc Finger 107 138 - -
Rops2g01083 373 Gene3D Classic Zinc Finger 139 167 - -
Rops2g01083 373 MobiDBLite consensus disorder prediction 349 363 - -
Rops2g01083 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 264 IPR013087 -
Rops2g01083 373 Gene3D Classic Zinc Finger 168 195 - -
Rops2g01083 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 200 IPR013087 -
Rops2g01083 373 ProSitePatterns Zinc finger C2H2 type domain signature. 112 134 IPR013087 -
Rops2g01083 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 347 - -
Rops2g01083 373 Gene3D Classic Zinc Finger 209 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01083 Rops-Chr2 15337981 15341533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01083 7 358 C2H2 Transcription Factor Family AT4G06634 62.933 4.98e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g01083 zf-C2H2 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01083 - - gmx:100785164 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01083 2 15337981 15341533 Rops2g01083 2 15337981 15341533 ECH