Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01078 ATGGACGGTCATGGTGACAATTCTCAAAAGTCTCCAAACAAGGAGCATGAAGGCCCTAAGGAACCAGTTTTCTTACATGGTGATTTGGATCTCTTGATAATAGAAGCTAAGTCTCTTCCAAATTTAGATTTATCTACTGAAACAGTTAGAAAATGTATCACCATGGGCAACATGTGCACCCCTCCTTTTGTAAAAGGACTTAAGACACACTCTGGAAAAGATAAGATAATAACTAGTGACCCTTATGTCTCTGTCTGCATAGCTGGGGCTACCATAGCTCGAACTAGAGTGATTGCTAACTGTGAGAACCCTTTATGGGATGAGCATTTTGTTATTCCTGTTGCTCACCCTGCTCAAAAAGTGGAGTTTCATGTAAAGGATAATGATGTTCTTGGTGCTGAACTCATTGGAGTAGTGGAGATACCTGTTCAGAAGATACTTTCAGGAAATACTATTAATGATTGGTTTCCCATCATTGGTCAATATGGAAACTGCTTGAAACCTTATCCTGAGTTGCATATTTCTATTCAGTACAAGCCAATTGGAGTGCACCCTTCGGATAATATCAGTAATGAAGATGGGAAAGCTTATTTAGCAGTTCCTAAAACATACTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATGTACCAGATGGATGGTCAGTTTATCACCCAGTAAAGCTTGTTAGAGAGCCAACAAAACCATTACCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAATACAAGTCACAAGAAGGGCTCCGAGTGGTCATGCTGATTTGGGATGACAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCATGATGAAGAGACTAAAAAGTTTTTTAAACATTCCACTGTTCATTGTGTGCTATCTCCCCGTTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTCTTTACACATCACCAGAAATGTGTGCTTGTGGACACTCAAGCTTCTGGGAATAATCGGAAAGTAACTGCTTTTATTGGTGGTCTGGATCTGTGTGATGGCAGATATGATACACCTGAGCATCGAATTTTTAAGGATCTAGATTCAGTCTTTCTCAATGATCATCATAATCCTACATTTCAAGTCAATTCAAGTGCACCAAGGCAGCCATGGCATGACTTGCATTGCAAAGTTGAAGGTCCAGCTGCATATGATATACTAACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAATTGGCACGATGATGCTTTGTTGAGACTAGATCGTATTTCATGGATTCTCAATCCATCTTCTGGTCCAAATGGTGATAAAGTTGTTCATGTAACTGATGAAAATGATCCTGAGAGTTGGCATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAGGGCTTTCCAAAGGATATTGACAAAGCTAAGGCTGAGAATCTTTTATGTGGAAAAAATTTGAAAGTTGACCGAAGCATCCATGCTGCTTATGTAAAAGCAATAAGATCAGCTCAACACTTCATATATATTGAGAATCAGTATTTCCTGGGCTCTTCATATCATTGGCCTTCATATAAAAATGCAGGTGCACATCACTTGGTTCCTATGGAGTTGGCTTTAAAAATAGCCAGCAAGATCAAAGCAAATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCATCTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTATTGCTGATGCCCTTAAAAAAGAAGGTCTATCAGATCGGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGGGAACCTCAATCCCCAGTTAGTCCATCATCAACACAAAGTCAATCATGTGAAAATCGTGCTTTGGTAGCAGCAAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGAATACGTGATCATTGGATCAGCAAATATTAACCAGAGATCATTGGATGGTTCAAGGGACACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAAGAAGTCTCATCCACGTGGCCAGGCCAATAAGGATAACCTTGGGGATAACCCTGGGGATATCCATGCGGATAACCCTGGGGATATCCATGCGGATAACCCTGAGGATAACCCTGGGTCGATGGCGGAAAAGGAGGTGGTACAAAAGGAGGCGGGAAAAAGGGAGGCTGAGGCTGGTGCTGAGGGTGAAGCTGAGGCTGTGGCTGAGGCGGCGATGAATCATCTCGCTGACGACGTCGACCTCGTCCACGCCCTCTTCCTCGTACAACAGGTGGCTGGATCGGTGGATCAGGATCAGGAATATGTGGTGCATGAGGTGCTCGATGAACTGGACCACCGTCGACAATTGTACGGTCTATCTGGTCGTCGCCGAAATATGCAGAACCCGAGTCGAAAGACTGAGTAG 2550 0.422 MDGHGDNSQKSPNKEHEGPKEPVFLHGDLDLLIIEAKSLPNLDLSTETVRKCITMGNMCTPPFVKGLKTHSGKDKIITSDPYVSVCIAGATIARTRVIANCENPLWDEHFVIPVAHPAQKVEFHVKDNDVLGAELIGVVEIPVQKILSGNTINDWFPIIGQYGNCLKPYPELHISIQYKPIGVHPSDNISNEDGKAYLAVPKTYFPLRKGGSVTLYQDAHVPDGWSVYHPVKLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKVTAFIGGLDLCDGRYDTPEHRIFKDLDSVFLNDHHNPTFQVNSSAPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWILNPSSGPNGDKVVHVTDENDPESWHVQVFRSIDSGSVKGFPKDIDKAKAENLLCGKNLKVDRSIHAAYVKAIRSAQHFIYIENQYFLGSSYHWPSYKNAGAHHLVPMELALKIASKIKANERFSVYIVIPMWPEGVPSSAAVQEILFWQGQTMSMMYKIIADALKKEGLSDRYHPQDYLNFYCLGKREPQSPVSPSSTQSQSCENRALVAAKKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKKSHPRGQANKDNLGDNPGDIHADNPGDIHADNPEDNPGSMAEKEVVQKEAGKREAEAGAEGEAEAVAEAAMNHLADDVDLVHALFLVQQVAGSVDQDQEYVVHEVLDELDHRRQLYGLSGRRRNMQNPSRKTE* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01078 849 PIRSF PLD_plant 14 224 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops2g01078 849 PIRSF PLD_plant 223 726 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops2g01078 849 Pfam C2 domain 27 158 IPR000008 -
Rops2g01078 849 SMART C2_3c 28 155 IPR000008 -
Rops2g01078 849 MobiDBLite consensus disorder prediction 713 778 - -
Rops2g01078 849 Gene3D Endonuclease Chain A 245 440 - -
Rops2g01078 849 SUPERFAMILY Phospholipase D/nuclease 511 702 - -
Rops2g01078 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 666 693 IPR001736 GO:0003824
Rops2g01078 849 SMART pld_4 666 693 IPR001736 GO:0003824
Rops2g01078 849 SMART pld_4 324 359 IPR001736 GO:0003824
Rops2g01078 849 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g01078 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 324 359 IPR001736 GO:0003824
Rops2g01078 849 MobiDBLite consensus disorder prediction 738 776 - -
Rops2g01078 849 FunFam Phospholipase D delta 219 439 - -
Rops2g01078 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 180 IPR035892 -
Rops2g01078 849 Pfam PLD-like domain 518 702 IPR025202 -
Rops2g01078 849 PANTHER PHOSPHOLIPASE D 23 725 IPR015679 -
Rops2g01078 849 Gene3D C2 domain 23 179 IPR035892 -
Rops2g01078 849 ProSiteProfiles C2 domain profile. 8 156 IPR000008 -
Rops2g01078 849 SUPERFAMILY Phospholipase D/nuclease 248 426 - -
Rops2g01078 849 Gene3D Endonuclease Chain A 477 719 - -
Rops2g01078 849 Pfam Phospholipase D Active site motif 325 359 IPR001736 GO:0003824
Rops2g01078 849 CDD C2_plant_PLD 22 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01078 Rops-Chr2 15286987 15294340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01078 17 723 Phospholipase D Gene Family (Wang group) AT2G42010 52.461 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01078 K01115 - gmx:100779740 1286.17