Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01021 ATGGCTTTGTTTTCTCAGTTACTTCTTCATTTTGCCTTGTTAATCATCCTCCTCCCTTTTGATATACACAACCTTGTGGTTGGTGTATCATCAACCACTCTAAGCATCACCACAGACAAAGAAGCCTTGATCTCATTGAAGTCTCAATTGAGTAATGACACTTCTCACCCTTTATCCTCTTGGAGCCAGAATTCATCCCCTTGCAATTGGACTGGTGTCCTTTGTGACAAGCATGGCCAGAGAGTGACTGGCCTGGATCTTTCAGGCTTGGGACTCTCAGGTCACTTAAGCCCTTATATTGGTAACCTATCCTTTCTTCAGTCCCTCCAATTGCAGGATAATCAGCTCACAGGAGTGATTCCTGACCAAATTGGCAATCTCTTCAGTTTGAGAGTTCTAAATATGAGCTCTAACAGATTTGAAGGAAAGCTTCCTTTAAACATCACCCACATGGATAAGCTTCAGATTCTTGATTTATCCTCAAACAAGATTGTCAGCAGAATTCCTGAAGACATCAGTGGCTTGAAAAAGCTGCAGGTCTTGAAACTGGAAAAGAATAGTTTCTATGGTGCCATCCCAGCAGCTCTAGGAAACATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTCTCTCAAAGGATGGATTCCAAGTGACTTGGGAAGGCTCCATAACTTAATTGAGCTTGATCTCACTCTCAACAATCTCACTGGGACTGTTCCACCTGTTATATATAACCTATCTTCCCTTGTTAACTTGGCCTTAGCTGCAAACTCCTTGTGGGGTGAGATTCCTCAGGATGTTGGTCATAAACTTCCTAATCTCCTAGTGTTCAATTTCTGCTTCAATAAATTCACAGGTAGAATTCCAGGGTCTTTGCACAACCTCACTAACATTCGTGTCATTCGCATGGCTTCCAACCTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTTCCATTTCTTCACATGTATAATATCGGCTATAACAGGATAGTCAGCTCAGGAGTTAGAGGCCTGGACTTCATTACTTCTTTGACAAATAGCACTTACCTCAACTTTCTGGCCATTGATGGCAATATGCTAGAAGGTATAATTCCTGAAACCATTGGCAATCTCTCCAAGGATCTCTCAAAATTATACATGGGACAGAATCGTTTCAATGGAAGCATACCAACCTCCATTGGTCGTCTTAGTGGCTTGAGGTTGTTAAACTTGAGCCACAATTCAATCACTGGAGAAATCCCACAGGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTGGCTGGAAATCAGATCTCAGGAGGCATTCCAACCTCCTTTGGTAATCTCCTAAATTTAAACCAGATTGATTTGTCAAGAAATGAACTTGTGGGTAGAATACCCATAAGTTTTGGGAATTTCCAAAACCTGCTCTACATGGACTTATCCAGCAACAAACTCAATGGAAGCATACCAGTGGAAATCCTCAATCTTCCAACTTTGAGCAATGTTTTAAACTTGTCTATGAACTTCTTGAGTGGACAAATACCTCAAGTTGGGAAATTAACTAGTATTGCCTCCATTGACTTTTCTAACAACCAATTGTATGGTGGCATCCCCAGCTCATTCAGCAATTGTTTGAGTTTGGAGAAATTGTTTTTGTCCAGGAATTTGCTTTCAGGTCCCATTCCAAAAACTCTTGGAGATGTGAGAGCCTTGGAAACTTTGGACCTGTCCTCCAACCAACTCTCTGGATCCATTCCTCTTGAACTTCAAAATTTACATGTCCTTCAGCTTTTAAATCTCTCTTACAATGATTTAGAAGGAGCAGTTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTGCCGTCCATTTAGAAGGCAATAGAAAACTCTGCTTGCATTTTGCATGTGTACCTCACGGCCACGGAAGAAGACATGTCAGCCTTTACATCATCATAGCCATCGTGGTAACATTGGTACTATGTCTCACAATTGGTTTGCTAATATACATGAAGAACAGAAAGTTGAAGGTCACAGCAGCAGCAACAGCAACATCTGAATTGCTAAAGCCTCAAGCTCCAATGGTTTCTTATGATGAACTTCGTCTGGCAACTGAGGAGTTCAGTCAGGAAAATCTATTAGGAATTGGGAGCTTTGGCTCAGTATACAAAGGCCATCTAAGTAATGGAAATACTGTTGCAGTGAAAGTGCTTGACACTCTAAGAACTGGTTCTTTAAAGAGCTTCTTTGCAGAGTGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTCATCACATCATGCTCTAGTGTTGATTTTAAAAACAATGATTTTCTGGCTCTGGTCTATGAGTACTTGTGTAATGGGAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAGCATGCAAACGGAAATGGGTTGAACCTTTTGGAGAGACTGAATATAGCCATAGATGCTGCATGTGCATTGGATTACCTGCACAATGAAAATGAAATTCCTATTGTGCATTGTGATTTGAAGCCCAGCAACATTCTCCTGGATGAAGATATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTACTGATTCAAAGATCAACTAATCAAGTTTCCATTAGCTCCACTCATGTCCTCAGGGGTTCAATTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAACCATCAGCAGCTGGAGATGTATATAGTTTTGGCATAGTGTTACTAGAGCTCTTCTCAGGAAAAAGCCCAACAGATGAATGCTTCACAGGAGGCCTTAGCATAACAAGATGGGTGCAATCAGCATTGAAAAACAAGACTATGCAAGTCATTGACCCTCAGCTGTTATCCCTCATTTTTCATGATGACCCTCTCAAAGGTCCCAATCCACAACTCTACTGTGTGTATGCAATTGTAGGAGTTGGCCTATCCTGTGCTGCAGACAATCCAGATGAACGCATTGGCATTAGAGATGCTGTTCGCCAACTAAAAGCTGCTAGAGATTCTGTTTTGAAAAACTCTGATATTAAAAGTCCTACTAGTCCCACCAACCGTTACTTTCAAGTTTCAGGAAAATGA 3081 0.4151 MALFSQLLLHFALLIILLPFDIHNLVVGVSSTTLSITTDKEALISLKSQLSNDTSHPLSSWSQNSSPCNWTGVLCDKHGQRVTGLDLSGLGLSGHLSPYIGNLSFLQSLQLQDNQLTGVIPDQIGNLFSLRVLNMSSNRFEGKLPLNITHMDKLQILDLSSNKIVSRIPEDISGLKKLQVLKLEKNSFYGAIPAALGNISSLKNISFGTNSLKGWIPSDLGRLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSLWGEIPQDVGHKLPNLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNLLEGTVPPGLGNLPFLHMYNIGYNRIVSSGVRGLDFITSLTNSTYLNFLAIDGNMLEGIIPETIGNLSKDLSKLYMGQNRFNGSIPTSIGRLSGLRLLNLSHNSITGEIPQELGQLEELQELSLAGNQISGGIPTSFGNLLNLNQIDLSRNELVGRIPISFGNFQNLLYMDLSSNKLNGSIPVEILNLPTLSNVLNLSMNFLSGQIPQVGKLTSIASIDFSNNQLYGGIPSSFSNCLSLEKLFLSRNLLSGPIPKTLGDVRALETLDLSSNQLSGSIPLELQNLHVLQLLNLSYNDLEGAVPSGGVFQNLSAVHLEGNRKLCLHFACVPHGHGRRHVSLYIIIAIVVTLVLCLTIGLLIYMKNRKLKVTAAATATSELLKPQAPMVSYDELRLATEEFSQENLLGIGSFGSVYKGHLSNGNTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRKHANGNGLNLLERLNIAIDAACALDYLHNENEIPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTNQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSITRWVQSALKNKTMQVIDPQLLSLIFHDDPLKGPNPQLYCVYAIVGVGLSCAADNPDERIGIRDAVRQLKAARDSVLKNSDIKSPTSPTNRYFQVSGK* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01021 1026 SMART LRR_sd22_2 151 174 - -
Rops2g01021 1026 SMART LRR_sd22_2 423 449 - -
Rops2g01021 1026 SMART LRR_sd22_2 223 249 - -
Rops2g01021 1026 SMART LRR_sd22_2 567 588 - -
Rops2g01021 1026 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Rops2g01021 1026 ProSiteProfiles Leucine-rich repeat profile. 569 592 IPR001611 GO:0005515
Rops2g01021 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Rops2g01021 1026 Gene3D Ribonuclease Inhibitor 339 634 IPR032675 -
Rops2g01021 1026 ProSiteProfiles Leucine-rich repeat profile. 153 176 IPR001611 GO:0005515
Rops2g01021 1026 Pfam Protein kinase domain 706 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01021 1026 SUPERFAMILY L domain-like 37 333 - -
Rops2g01021 1026 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
Rops2g01021 1026 SMART LRR_typ_2 223 247 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 151 175 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 399 422 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 423 446 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 567 590 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 471 495 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 103 127 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 296 320 IPR003591 -
Rops2g01021 1026 SMART LRR_typ_2 591 616 IPR003591 -
Rops2g01021 1026 Gene3D Transferase(Phosphotransferase) domain 1 786 1016 - -
Rops2g01021 1026 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 786 1009 - -
Rops2g01021 1026 SUPERFAMILY Protein kinase-like (PK-like) 686 997 IPR011009 -
Rops2g01021 1026 Gene3D Ribonuclease Inhibitor 271 338 IPR032675 -
Rops2g01021 1026 SMART serkin_6 705 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g01021 1026 ProSitePatterns Protein kinases ATP-binding region signature. 711 733 IPR017441 GO:0005524
Rops2g01021 1026 Gene3D Phosphorylase Kinase; domain 1 667 785 - -
Rops2g01021 1026 Gene3D Ribonuclease Inhibitor 198 270 IPR032675 -
Rops2g01021 1026 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Rops2g01021 1026 CDD STKc_IRAK 711 998 - -
Rops2g01021 1026 PANTHER OS04G0122200 PROTEIN 221 995 - -
Rops2g01021 1026 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Rops2g01021 1026 Pfam Leucine rich repeat 523 580 IPR001611 GO:0005515
Rops2g01021 1026 FunFam LRR receptor-like serine/threonine-protein kinase EFR 676 785 - -
Rops2g01021 1026 SUPERFAMILY L domain-like 378 629 - -
Rops2g01021 1026 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 636 - -
Rops2g01021 1026 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Rops2g01021 1026 ProSiteProfiles Protein kinase domain profile. 705 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01021 Rops-Chr2 14394226 14397754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01021 38 1008 Receptor kinase-like Gene Family AT3G47570 42.440 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops2g01021 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01021 - - gmx:100783512 1684.85