Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01018 ATGAAACAGTTGAAAATGGCTGAAGAATCTCACGCCAAAGAGGATAATCCTTTTAGGCACGAGCCAAAAATGGAAAATGCACTTGAATCTTCTGGCAGCCCACGAAGTAGAAAGGTATCAGCCAGATGGGATTCAGTTGAAGCATGTAGGCCTATGATTGATGAAGCACCAGTGTTTTACCCAACTATTGAGGAGTTTGAAGACACACTTGATTACATAGCAAAGATACGTCCCCTAGCTGAACCCTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTTCCTCCTTGCCTATTTAAGGAGCAAGATGTATGGGAAAAAGCTAAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAGAACAGGGAGCCAATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAGGCAGTCAAAGATGGCCGCATGTAAGAGAACTGCCAATTCAGGTTCTGAAACTACTGTTGCTTCTGAACCTGATGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTGAAGACTTTCAGCAATATGCAAGTGTTTTTAAAGATTGCTACTTTGGGTTGAATGATGCCAATGAATATGGAAAAGGTAGTAATAATAATCACCAGAAGAGATGGGAGCCCTCTGTAGAGGAAATTGAAGGTGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTTGTTTTCCTAAGACATCATCCTTAACTAAGAGTGATTCAGATCGGTATGCCCTGTCTGGCTGGAATCTGAATAACTTTGCGCGACTGCCTGGATCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCGTGGCTGTACGTTGGAATGTGTTTTTCAACATTTTGCTGGCATGTTGAAGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGTGTGCCTGGGATCCATGCTTCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAGTTGGTGACTCAGTTTTCTCCTTCAGTACTTAAATCTGAGGGGGTGCCTGTATATCGTACTGTCCAGCATTCTGGGGAATTTGTTATCACCTTTCCAAAGGCATACCACTGTGGTTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTTTTGATTGGTTTGTGCATGGTCAGAATGCTGCCGAGCTTTACAGTCTGCAGTGCCGCAAGACAACATTGTCTCATGACAAGTTGTTATTTGGATCTGCTCAGGAAGCTGTAAAAGCCCTTGCAGAAATCACTCTTCATGGGAATTTTTTTTTAAAATATTCCAAATGGAGAAGCGCTTGTGGTAAAGATGGAGTTCTTACCAAGGCAGTCAAGACAAGGATAATGATGGAAAAAGAGAGGCTTGACTGTCTTCCAACTTATTTAAAGATGCTGAAGATGAACAGAAACTTTGATTTGTTTGAAGAAAGAGAATGCTTCTCTTGCTTTTATGACTTGCACCTGTCTGCTGTTGGTTGCAAGTGCTCTCCTGACAGTTATTCTTGTCTCAGACACTCAGATCTGTATTGCTCATGTGAAATGGACCAAAAATTTGTTCTGTTTCGATATACTATGGATGAGCTAAGTACATTGGTCAAAGCATTAGAAGGAGAATCCGGCTCAATTAAAGTGTGGTCAAATAAAAACACTGGAATGGTTGTTGCTAATCCTGAGGATGCTTGCATGCATAAACAAGATACGGAGAGGGCCATATACAAAACGAAGAGTTATGAAGAAGGGAAAAGCTCATCTTGTTGTGCAGGAATGAATGAGAATTCAAATTCAATGGTACCTAGCAGTCCTCACAGTCACCTTTCTTCAGAGTTGGTCCACTCAGAGTCTCGTCATGAAACTTTTAGCATGCCATATGGGGCTATAGATTGTAATAAGGGAAATGAAGTTAAGGAGAAGCAGAGAGGTTCTCTGGATTTGAATATTGATGTTCTATCAGGTGAACCTGAAAATTATTTGCTACATGCAGCTGATAGCCATCACAACAAGGGCGTTCATTGTTTGGAAAAAGTCAGCTATGTAGAGGCCAGTAAGGAAGGTGACAACATGGAACTTGGTGCTGGTGGTATTACTGTCTTGGAGAAAGAATTTTCGTCAAGTTCAAGTGATGTTCGAAATCCTTGTACGCCTGATGGTTGTAAATTGTTTGGGGTGGATATGCAAATGCATTCAGATTCAGGAGGTCAACTCAATAGTGTATTTAAAATGGGAATTGTAGACACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTTCCTAATCCAGAAATTTAGCATTTCTGTTGAGCCTGTAAGTTTGGGCTCTGTTTTATATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCTAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGCACCTGTAATTATGTTTCTGAAGTCATTGATGCTGGATTTCTCGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGACACAGTTCTTGACAGACTAAATCATGAAATTAAGAGGCGAAGGAGTCTAGGTGAACTAGAACTTCCTCCCTTGGAACTTCTGCAAAGCATCAATGGTCATGAAATGTTTGGATTCCTTTCACCATCCATTATTCAGTCCATTGAAGCTCAAGATCCCAGTCATCTATGTGTAGAGTACTGGAACCACAAAGGAGTTATTTCTGAATCTTCAAGCCAGGCCGTTGATGACTATAAGTCCACTCATGGTTCAAGTAACTCTCTAGGTGACTTAAATGCCAAACTTTTTGGTGTCAATTTGACAAAGCTGGAGCAAGATAACATAGGAGAAAGTAGTCATTCTTTTGAAGAGATGAAATTGATCCTACAAGGATTCTTAAAAAAGGCAAGTCCTGATGAGTTAAGTGCAATGTATAAGTTATTCAGCTCTGATGCACAATTAACTGAGTGGAGAGTGGTATTTTTAAAGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 3156 0.4091 MKQLKMAEESHAKEDNPFRHEPKMENALESSGSPRSRKVSARWDSVEACRPMIDEAPVFYPTIEEFEDTLDYIAKIRPLAEPYGICRIVPPACWVPPCLFKEQDVWEKAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRRQSKMAACKRTANSGSETTVASEPDEKFGFQSGSDFTLEDFQQYASVFKDCYFGLNDANEYGKGSNNNHQKRWEPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSCFPKTSSLTKSDSDRYALSGWNLNNFARLPGSALCFEGSDISGVVVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGIHASGLEDAMRKHLPDLFEEQPNLLNELVTQFSPSVLKSEGVPVYRTVQHSGEFVITFPKAYHCGFNCGFNCAEAVNVAPFDWFVHGQNAAELYSLQCRKTTLSHDKLLFGSAQEAVKALAEITLHGNFFLKYSKWRSACGKDGVLTKAVKTRIMMEKERLDCLPTYLKMLKMNRNFDLFEERECFSCFYDLHLSAVGCKCSPDSYSCLRHSDLYCSCEMDQKFVLFRYTMDELSTLVKALEGESGSIKVWSNKNTGMVVANPEDACMHKQDTERAIYKTKSYEEGKSSSCCAGMNENSNSMVPSSPHSHLSSELVHSESRHETFSMPYGAIDCNKGNEVKEKQRGSLDLNIDVLSGEPENYLLHAADSHHNKGVHCLEKVSYVEASKEGDNMELGAGGITVLEKEFSSSSSDVRNPCTPDGCKLFGVDMQMHSDSGGQLNSVFKMGIVDTSNTSISLTNQSFLIQKFSISVEPVSLGSVLYGKLWCSKHAIYPKGFKSRVKFFSILDPASTCNYVSEVIDAGFLGPLFKVTMEEHPNEAFTNTSADKCWDTVLDRLNHEIKRRRSLGELELPPLELLQSINGHEMFGFLSPSIIQSIEAQDPSHLCVEYWNHKGVISESSSQAVDDYKSTHGSSNSLGDLNAKLFGVNLTKLEQDNIGESSHSFEEMKLILQGFLKKASPDELSAMYKLFSSDAQLTEWRVVFLKLIEEIQKACA* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01018 1051 MobiDBLite consensus disorder prediction 146 160 - -
Rops2g01018 1051 FunFam Putative lysine-specific demethylase JMJ16 805 943 - -
Rops2g01018 1051 SMART cupin_9 267 430 IPR003347 -
Rops2g01018 1051 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Rops2g01018 1051 ProSiteProfiles FYR domain FYRC motif profile. 859 949 IPR003889 GO:0005634
Rops2g01018 1051 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 759 - -
Rops2g01018 1051 SUPERFAMILY Clavaminate synthase-like 261 452 - -
Rops2g01018 1051 Pfam jmjN domain 57 90 IPR003349 -
Rops2g01018 1051 MobiDBLite consensus disorder prediction 1 39 - -
Rops2g01018 1051 Pfam F/Y rich C-terminus 861 947 IPR003889 GO:0005634
Rops2g01018 1051 SMART JmjN_1 55 96 IPR003349 -
Rops2g01018 1051 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Rops2g01018 1051 Pfam F/Y-rich N-terminus 810 854 IPR003888 GO:0005634
Rops2g01018 1051 ProSiteProfiles FYR domain FYRN motif profile. 799 857 IPR003888 GO:0005634
Rops2g01018 1051 MobiDBLite consensus disorder prediction 1 26 - -
Rops2g01018 1051 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Rops2g01018 1051 SMART fyrc_3 863 958 IPR003889 GO:0005634
Rops2g01018 1051 SMART fyrn_3 813 857 IPR003888 GO:0005634
Rops2g01018 1051 MobiDBLite consensus disorder prediction 122 165 - -
Rops2g01018 1051 Gene3D Cupin 41 414 - -
Rops2g01018 1051 MobiDBLite consensus disorder prediction 128 145 - -
Rops2g01018 1051 Gene3D - 805 943 - -
Rops2g01018 1051 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01018 Rops-Chr2 14360068 14368306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g01018 64 1047 JUMONJI Transcription Factor Family AT4G20400 47.023 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops2g01018 JmjC 1.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01018 K11446 - gmx:100784581 1697.56