Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g01016 ATGCTAACAGATAAGCGATCCATAAAACAAAATGGCGAATTCATCATACAGCAACATGGTCAAGGAGCCACAGCTATGCAGAGCCAAATTGTGTGCAATGGTTGTAGGAACATTCTGCTTTACCCAAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCCCAACTTTATTGTGGAGGTTGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGTGTCCGATGTTCCTGCTGTCACACTGTAAACCTTGCTCCAGCTAATCAAGTTGCCCATGTCCCTTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTGTTTGTCATTATATTACTAATATCAGTATGTCCAATGGAAGGCTTCCAATTCCTGTCCATAGACCTAATGGGACAACCAACTCTGCAGCATTACCTACCACTTCAACGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCCGTTGATTCAAGTGGGAAACTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGAGAAGAAATAA 603 0.4461 MLTDKRSIKQNGEFIIQQHGQGATAMQSQIVCNGCRNILLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPANQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNISMSNGRLPIPVHRPNGTTNSAALPTTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g01016 200 PANTHER PROTEIN LSD1 27 199 IPR040319 -
Rops2g01016 200 Pfam LSD1 zinc finger 32 56 IPR005735 -
Rops2g01016 200 Pfam LSD1 zinc finger 71 95 IPR005735 -
Rops2g01016 200 Pfam LSD1 zinc finger 108 132 IPR005735 -
Rops2g01016 200 NCBIfam zinc finger domain, LSD1 subclass 105 134 IPR005735 -
Rops2g01016 200 NCBIfam zinc finger domain, LSD1 subclass 68 97 IPR005735 -
Rops2g01016 200 NCBIfam zinc finger domain, LSD1 subclass 29 59 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g01016 Rops-Chr2 14296020 14312789 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Rops2g01016 zf-LSD1 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g01016 - - gmx:100776394 332.798