Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00992 ATGGGAAGCTTAGACCCTACGGCGGAGGAGTTCAGGCCAAGAAACCCTAACCATGTGGCCCTACCACCACCTGCAACACTTTTAAGGCACCCTTACGCTTATCCTTACTCATTTACCGGAGGAGTGGAAACGGTGTCGTTTTACTTCGGCGAAGGTGTGGTTCCTTTTGGTGTCGTTCCGTATCCTCAGACACAGACACAATTGTCGCCTCCCCCGCCGTCCACGTCATCAACGCGGTCGCTGTTACTGAGCTTCGTGCCGTCAGAGACGGTGGTTAGTGAGTCCTTACTGAGAAGGGAATTGGAAGTGTTCGGAGATGTGAGAGGGGTTCAGATGGAACGGTTGCGTGAAGGAACGGTCATTGTTCACTTCTATGACCTGAGACATGCGGAAACGGCGTTAACAGCGATTCGGTGGCAGCAGCAGCATCAGACGAGGCTTCGGTTCTCGCCGGCGCGTGGGTTTATTGCCGGTGGTGTCGTGTGGGCACAGTACATTCTCCCGGCGCGTGATGCTGTTCCTGATGGACAAAACCAAGGGACCATAGTGGTTTTCAATTTGGATTCCGACGTGGACGCCGAGAGTCTCCGAGAAATTTTTGAGGCCTTTGGTCCTGTAAAGGAATTCAGGCATACCCCATCAAAAAAGAACCAAAGATTCGTGGAGTTTTTTGACATAAGAGATGCAGCTAAGGCTTTGAAGCAGATGAATGGGAAGGAAATTCACGGGAAAAAGATTGTTATTGAATTCAGTAGACCGGGTGGTCATAGCAGGAAGTTCTTTCATGCTGCTCCTTCTACCATTTCCAAGTCAAAAGCACTGTCCTTTTCTCCTTCCCCTCCTCCACCATTGCAGCGTAGATTTTGGCCTCATTTTGCTCCTGATGCTACTACTAATACTAATAGTTCACATTTTTCTCAAGCCCAATTATCTTCCAACAAAACATTGAGTGCTTCCATTATTCGGAATGGGGTTGAAGAGAGGGATCATTCTCACGAGCCTTCCAAGGGAAATTCTGTGAAAAAACAAAGCAATGAGTCCACGGTGGAAAGCATGAAGCACCAACAACCAAGTAGAAGCAGACATTGGAGGGGAAAGGAAGCAAAGAACCATGAAACCCGGTTTCTAATTAAGGAAGATGCTGCAGCTGCGTCTGGTACCATAGATTCTAGAACTACTGTGATGATCAAGAACATACCCAACAAGTACAGCCAGAAGTTACTATTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAGATTGGAGATGGAGATGACCAGATTTTGTCATCCTACGATTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACGTCTCCCGAGGCAACCCTGAGGCTCTACAAGGCTTTCCATCTTCAACCCTGGGAGGTGTTCAATTCAAGAAAAATTTGTGAGGTCACATATGCCAGAGTCCAGGGATTGGAAGCGTTGAAAGAGCATTTCAAGAACTCCAAATTCCCATACGAAATGGACCACTACCTGCCAGTGGTGTTTTCACCGCCTCGAGACGGGAAGCAACCGACGGAGCCACTTCCAATTGGTCACAGGCACCAAACCATGTCAATAGGTCCACATAGCCAGAGGAAAGGGGCTTCTGATGATGATGATGTGGATACAGTGAGCAATGGCTTGTTAACGCGTGATGGTAATCAAGTATAA 1716 0.4779 MGSLDPTAEEFRPRNPNHVALPPPATLLRHPYAYPYSFTGGVETVSFYFGEGVVPFGVVPYPQTQTQLSPPPPSTSSTRSLLLSFVPSETVVSESLLRRELEVFGDVRGVQMERLREGTVIVHFYDLRHAETALTAIRWQQQHQTRLRFSPARGFIAGGVVWAQYILPARDAVPDGQNQGTIVVFNLDSDVDAESLREIFEAFGPVKEFRHTPSKKNQRFVEFFDIRDAAKALKQMNGKEIHGKKIVIEFSRPGGHSRKFFHAAPSTISKSKALSFSPSPPPPLQRRFWPHFAPDATTNTNSSHFSQAQLSSNKTLSASIIRNGVEERDHSHEPSKGNSVKKQSNESTVESMKHQQPSRSRHWRGKEAKNHETRFLIKEDAAAASGTIDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQILSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPYEMDHYLPVVFSPPRDGKQPTEPLPIGHRHQTMSIGPHSQRKGASDDDDVDTVSNGLLTRDGNQV* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00992 571 Gene3D - 174 260 IPR012677 -
Rops2g00992 571 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g00992 571 MobiDBLite consensus disorder prediction 340 354 - -
Rops2g00992 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 246 IPR000504 GO:0003723
Rops2g00992 571 Gene3D - 320 516 IPR012677 -
Rops2g00992 571 MobiDBLite consensus disorder prediction 326 368 - -
Rops2g00992 571 CDD RRM2_MEI2_EAR1_like 179 249 - -
Rops2g00992 571 Pfam RNA recognition motif 2 391 501 IPR007201 -
Rops2g00992 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 253 IPR000504 GO:0003723
Rops2g00992 571 SUPERFAMILY RNA-binding domain, RBD 180 469 IPR035979 GO:0003676
Rops2g00992 571 SMART rrm1_1 181 249 IPR000504 GO:0003723
Rops2g00992 571 SMART rrm1_1 80 148 IPR000504 GO:0003723
Rops2g00992 571 FunFam Protein MEI2-like 1 179 273 - -
Rops2g00992 571 FunFam Terminal EAR1-like 1 337 497 - -
Rops2g00992 571 MobiDBLite consensus disorder prediction 518 571 - -
Rops2g00992 571 SUPERFAMILY RNA-binding domain, RBD 70 152 IPR035979 GO:0003676
Rops2g00992 571 PANTHER RNA RECOGNITION MOTIF-CONTAINING 388 523 - -
Rops2g00992 571 MobiDBLite consensus disorder prediction 294 312 - -
Rops2g00992 571 CDD RRM3_EAR1_like 391 492 IPR034458 -
Rops2g00992 571 MobiDBLite consensus disorder prediction 271 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00992 Rops-Chr2 13910861 13913737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00992 175 252 Eukaryotic Initiation Factors Gene Family AT2G23350 35.366 7.19e-06 47.0