Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00978 ATGTTAGGGGAAGAGGGTAACAGCGGCGGCGGTGCCGGTAACCGGAGATCATTTTCCCGTTCAGTTTCTTGGACTGACCGGTCTCCGGTTACCCGGAAACCGCCGGCGGGTAACAAACCAAGATCGTTGCTGCCACCTCTTCGGCCTCTTTCAATCAACAAGCGTAGTGTTGAGGAGTGGCCAAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTGCAGAGACTCCGAGAGGGTCCGTTTCAGGTTCGGATTCGGGTCGGGTCGGGAAGGAGTTTCCGTTGAAGAGGGACAAGTTGGCTTTCTATGACAAGGAATGTTCTAGAATCGCTGAGCATGTGTACCTGGGAAGTGACACGGTGGCGAAGAACCACGAGCTTCTGAGACAGAATAGGATCACTCACGTGCTAAATTGTGTTGGGTTCGTTTGTCCTGAGTATTTCAAAAGTGAATTTGTGTATAAAACTCTTTGGTTGCAGGATAGTCCTACAGAAGACATAACTAGTATTCTTTATGATGTTTTTGATTATTTTGAGGATGTTCGACAACAAGGTGGGCGTGTACTTGTTCATTGTTGTCAGGGGGTTTCTAGATCAACCTCTTTGGTGATTGCATATCTAATATGGAGGGAAGGACAGAGTTTTGAGGATGCTTTTCAGTATGTGAAGAACGCACGTGGTGTCACAAATCCTAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCTAATTCTACTCTTAGGATGTATAGAATGGCTCCTCATTCTCCTTATGACCCTCTTCATTTGGTTCCTAAAATGGTTAACCACCCTTGTGCACAAGCACTTGATTCTCGTGGGGCTTTCATTATTCATGTTCCTTCTGCTATTTATGTATGGGTTGGGAAAAATTGTAGTTCTGTTATGTCTTGTAATGCAAGATCAGCTGCCATTCAGGTTATACGTTATGAGAAGGCAAATGGTTCAATTCTTAGCATTCATGAAGATGAAGAGCCACATGAGTTTTGGCTTGCACTTTCCAACCAACAATTGTTATCAGGTAATTGTGACAAAGGAGAGGTTAAGAAGGATGAATTGTTGTTGTCTTCTAAGGAAAGAATGGAGATTGATGGTGAAGTTGATGTGGGAATTCGTCCAAGGAAAGTTGATGAGTATGATTTGGATTTTGGGATTTTTCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTATCCAATACTGGATCAGAAACTTGCCTTCCTGCTAGAGAAAATGGTTGGGGAAGATTGAGGAGGAAGCTTGCTAGTGGTATCATGAAAAGATTGTTCACATCCTCCAAATGCTGTGATGTAACCCCTTCCAAAGATGAATCAAGTGTGAACATGGAAGAAGATGATCAACATTCTGTATGTGATCCTTTACCAACATCATCAAGCCATGTTTGTGGTTCATCTGATTCCTTTGATGCGTGTCTTGTACATAACAGCTTGGACAGGGCAAAAGATAATCTTGAAGTCATGGATCACTTTGTTCCTAGTGTTAATTCATCACTGCCACCGTCTCCTCATCCAACATCAGATTCATTTCCTTGTTTTTTAAGTAGCAGCCCCAAATTCAGTTCCAAGTCACCAACCCTTTCTCCCTCTAGTTCTGATTACAACAGTTCCTTTACATTTTCACCTTCTTCTGCAAATTGGTCTGACTTGTCATTCATGTCCTCCCGGCAGCCATCACCTTCTGGCCTGGAACCAACTGAACCCTTTTATGTTAAAGATCCATCTTTCTCAGTAAGATCATCCTCTTTACTTGACAAAGAAGCTGTCTCTTCATCTTCAGAGGCATTTTTGACTAATCACACCTTGGTAAGGACAAACTCCTACAAAGGATCTTACCCTTCCATTGCAGAACGCAGAGGGAGTAATCCACCACCTCGCATGTTGCTACCCTCAGTCAGTGAATCATCCCACACTCACAAGTTCTTGGTAAGATCAAAATCAGTCACTTTGCCTAACTTGGATGTTAGTTGCAAGCAATCCATGAACACAGTGGAAAATGGCTAA 2076 0.434 MLGEEGNSGGGAGNRRSFSRSVSWTDRSPVTRKPPAGNKPRSLLPPLRPLSINKRSVEEWPSAGSDDLGVWPLAETPRGSVSGSDSGRVGKEFPLKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNRITHVLNCVGFVCPEYFKSEFVYKTLWLQDSPTEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLIWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSTLRMYRMAPHSPYDPLHLVPKMVNHPCAQALDSRGAFIIHVPSAIYVWVGKNCSSVMSCNARSAAIQVIRYEKANGSILSIHEDEEPHEFWLALSNQQLLSGNCDKGEVKKDELLLSSKERMEIDGEVDVGIRPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETCLPARENGWGRLRRKLASGIMKRLFTSSKCCDVTPSKDESSVNMEEDDQHSVCDPLPTSSSHVCGSSDSFDACLVHNSLDRAKDNLEVMDHFVPSVNSSLPPSPHPTSDSFPCFLSSSPKFSSKSPTLSPSSSDYNSSFTFSPSSANWSDLSFMSSRQPSPSGLEPTEPFYVKDPSFSVRSSSLLDKEAVSSSSEAFLTNHTLVRTNSYKGSYPSIAERRGSNPPPRMLLPSVSESSHTHKFLVRSKSVTLPNLDVSCKQSMNTVENG* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00978 691 ProSitePatterns Tyrosine specific protein phosphatases active site. 190 200 IPR016130 GO:0016311|GO:0016791
Rops2g00978 691 MobiDBLite consensus disorder prediction 1 49 - -
Rops2g00978 691 ProSiteProfiles Dual specificity protein phosphatase domain profile. 106 248 IPR020422 GO:0006470|GO:0008138
Rops2g00978 691 Gene3D Severin 258 355 IPR029006 -
Rops2g00978 691 CDD DSP 107 241 - -
Rops2g00978 691 Pfam Dual specificity phosphatase, catalytic domain 114 244 IPR000340 GO:0008138|GO:0016311
Rops2g00978 691 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 248 IPR029021 -
Rops2g00978 691 SMART dsp_5 106 245 IPR020422 GO:0006470|GO:0008138
Rops2g00978 691 Gene3D Protein tyrosine phosphatase superfamily 92 248 IPR029021 -
Rops2g00978 691 SUPERFAMILY Actin depolymerizing proteins 252 358 - -
Rops2g00978 691 PANTHER MKPA PROTEIN 13 664 - -
Rops2g00978 691 MobiDBLite consensus disorder prediction 12 28 - -
Rops2g00978 691 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 165 226 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00978 Rops-Chr2 13725264 13727951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00978 1 142 Protein tyrosine phosphatase (PTP) family AT3G55270 37.838 1.17e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00978 - - tpra:123917031 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00978 2 13725264 13727951 Rops2g00978 2 13725264 13727951 ECH
Rops2g00978 2 13725264 13727951 Rops11g03791 11 71561072 71563701 PCT