Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00965 ATGGCTTTTCATCATAGAAAGCTGCTACATCAGCATCAGTACCATGATAATAGCCCAACACCTTCACCTCAACCGTCACTAGTTGCAGTGCCTCTTCCGCTGCCTCTTCCACTGCCTCTTCCACTGCCTTCCTATGAAGTAAATCATCATATCCATGTACTTCAACTCGCTTTGATTATCATGTCTTGCATGGTTGGTGTGGTTGTGTTTCTTTGCACCATGTTCACGATCCTAAGGAGCTATTACTCAAGGAGACTTGACCATAGCAATACAAACACACCGATATTGTTTGATGTTAATGGAGATTCTCCAGTTTCTGATGGTGATGATGATGATGTGGGGCCGGTTATTGATCACCCCATATGGTTCATTCGTACAGTAGGTCTTCAACAATCAGTAATAGATTCCATCACGGTCTTCAAATATAGAAAAGATGAAGGACTCATAGATGGGACTGAGTGTTCTGTTTGCCTTGGAGAGTTTCAACATGATGAGAGTCTCAGACTCTTGCCAAAGTGTAGCCACGCTTTTCACATCCCTTGTATTGATACTTGGCTGAGATCGCATAAAAATTGTCCCTTGTGTCGTGCACCTGTGGTTAATGATGCTGGTGATGGTAGTGTTACAGAGGTGAGTGTCACTGATCAGCATGATTCAAACGTTTCTGTTGAGACACAGAACCAAGAGGCCCAGCTAGAGAATTTTGATGGTGGGGTAGGATCAAATCAAATAGGAGAAAGTGAGAGTAGTGCACTGAGGATTGGAGATGACGATGATGATTCTGGTATATCATCATCTAGTGAAATCTCAGTTAAAATTTTGCCTAATTTGTTAGCACATGAAGTGGAAGAGGGAAGTTTGAGGAGGTCATTTTCCATGGATTTATCTTCTGCTTCAACGATTTTTCATGATGTGATTGATTTAAATTCTGATCGAGAGAGCTCAGACACACAGTTCGATGAAAAGAGCAATTCAGGTTGGAAGGATAAGACCATTGCTAAGCATGGTAGTGGAAGTTCAACCATTTGCAAACTGGCATCAATTGGACGTGCTTTGCAGAAGAGGCCTATCTCAATGAGAAGATCTTCTTCACAAAACAAGAAATTCTTATTTTCCAGACATTGCCGGAGCCAGAGTTCAACTCTTCCTTTGTAA 1155 0.4182 MAFHHRKLLHQHQYHDNSPTPSPQPSLVAVPLPLPLPLPLPLPSYEVNHHIHVLQLALIIMSCMVGVVVFLCTMFTILRSYYSRRLDHSNTNTPILFDVNGDSPVSDGDDDDVGPVIDHPIWFIRTVGLQQSVIDSITVFKYRKDEGLIDGTECSVCLGEFQHDESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVVNDAGDGSVTEVSVTDQHDSNVSVETQNQEAQLENFDGGVGSNQIGESESSALRIGDDDDDSGISSSSEISVKILPNLLAHEVEEGSLRRSFSMDLSSASTIFHDVIDLNSDRESSDTQFDEKSNSGWKDKTIAKHGSGSSTICKLASIGRALQKRPISMRRSSSQNKKFLFSRHCRSQSSTLPL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00965 384 Pfam Ring finger domain 153 196 IPR001841 -
Rops2g00965 384 SMART ring_2 154 195 IPR001841 -
Rops2g00965 384 FunFam RING-H2 finger protein ATL54 129 202 - -
Rops2g00965 384 SUPERFAMILY RING/U-box 137 203 - -
Rops2g00965 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Rops2g00965 384 CDD RING-H2_EL5-like 153 196 - -
Rops2g00965 384 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Rops2g00965 384 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 52 201 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00965 Rops-Chr2 13578269 13579742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00965 57 200 C3H Transcription Factor Family AT1G72220 47.917 6.97e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00965 - - lja:Lj4g3v2731650.1 349.747