Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00964 ATGAAGAGACTTGGAAGCTCTGATTCTTTGGGTGCTCTCATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACATGTATGGCAGGGAGTTCCAATCCATGTTGGAAGGACTTGATGAGGAAGGTTGTGTGGAAGAATCTGGACATCACACTGAGAAGAAGCGAAGATTAAGTGTGGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTAGAGAACAAGCTTGAACCTGACAGAAAGGTGAAGCTCGCACAAGAACTTGGCTTGCAACCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGGTGTTCTCAAAGCCAATTATGAAGCACTTAAACTTAACTATGACACCCTCAAAAATGACAACGAAGCCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGGTTGCAAGAAGAGAACACTGAAAGCGATGCTTCAGTGAAAGAAGAGATGATAACCCTGCAAGACTCCGAATACAAAATGAACCCACCAGCTGAAACCGTGATTCCTGGATCCGATTCAAAGGACTTGAATTATGAGTGTTTCAACAACAGTGATGGGGTGGGAGCTGCTTCGCTCTTCCCTACAGATTTCAAAGACGGTTCTTCAGATAGCGACTCTAGCGCAATCTTGAACGAAGACAACAATAGTCCTAACGTGGCTGTTTCTTCATCTGGGGTTCTTCAAAGTCACAACCTTTTGATGTCTCCTGGGTCATCTTCTCTCAAGTTCAATTGTTCTTCATCGTCATCGCCATCTTCCATGAATTGCTTCCAGTTTCAGAAGCAGTACCAGACACACTACGTGAAGATGGAAGAGCACAATTTCCTCAGTGCAGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCCTTCAGTGGTATTGTTCAGAAGAGTGGAGTTAA 963 0.4455 MKRLGSSDSLGALMTICPPTDEHSPRNNHMYGREFQSMLEGLDEEGCVEESGHHTEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNYDTLKNDNEALLKEVKELKSRLQEENTESDASVKEEMITLQDSEYKMNPPAETVIPGSDSKDLNYECFNNSDGVGAASLFPTDFKDGSSDSDSSAILNEDNNSPNVAVSSSGVLQSHNLLMSPGSSSLKFNCSSSSSPSSMNCFQFQKQYQTHYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00964 320 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Rops2g00964 320 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
Rops2g00964 320 MobiDBLite consensus disorder prediction 221 240 - -
Rops2g00964 320 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Rops2g00964 320 Gene3D - 51 119 - -
Rops2g00964 320 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Rops2g00964 320 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Rops2g00964 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 314 IPR045224 GO:0003700
Rops2g00964 320 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Rops2g00964 320 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Rops2g00964 320 CDD homeodomain 57 113 IPR001356 GO:0003677
Rops2g00964 320 Coils Coil 111 166 - -
Rops2g00964 320 SMART HOX_1 55 116 IPR001356 GO:0003677
Rops2g00964 320 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00964 Rops-Chr2 13537448 13539726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00964 1 316 Homeobox Transcription Factor Family AT2G22430 48.844 8.62e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g00964 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00964 K09338 - gmx:100796213 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00964 2 13537448 13539726 Rops2g00964 2 13537448 13539726 ECH
Rops2g00964 2 13537448 13539726 Rops11g03809 11 71768123 71770297 PCT