Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00956 ATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATTCCCGACGTCGGAGAGATGGAAGGTGACGTCGACATGTCCGCTGCTGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGTTTGAAGGAGATGGAAGAAGAAGCCGCCGCTCTTCGTGAGATGCAAGCCAAGGTCGAGAAAGACATTGGCACCGTTCCAGATCCTGCTAGTGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCTGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCCTATGTGGAATTTGTGGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTCTGCCTAAGAGGACTAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATCCTCCTCCTCCTCACTATTACTCCCCTTATGGATATGGGAAGGTTCCTAGATTTAGAAGGCCAGGTCGTTACATGCCCTACTACTAG 651 0.4946 MEEEEHEVYGGEIPDVGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKDIGTVPDPASAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYPPPPHYYSPYGYGKVPRFRRPGRYMPYY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00956 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Rops2g00956 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Rops2g00956 216 FunFam Polyadenylate-binding protein 1 25 159 - -
Rops2g00956 216 CDD RRM_II_PABPs 88 159 - -
Rops2g00956 216 Coils Coil 30 64 - -
Rops2g00956 216 Gene3D - 25 159 IPR012677 -
Rops2g00956 216 SMART rrm1_1 88 159 IPR000504 GO:0003723
Rops2g00956 216 MobiDBLite consensus disorder prediction 1 22 - -
Rops2g00956 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 14 172 - -
Rops2g00956 216 MobiDBLite consensus disorder prediction 63 83 - -
Rops2g00956 216 SUPERFAMILY RNA-binding domain, RBD 77 184 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00956 Rops-Chr2 13348130 13357372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00956 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 2.70e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00956 K14396 - gmx:100789721 365.155