Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g00950 | ATGCCAGTAGAAATGGACTTCATGTTTGTGCTATTGCTGTTGTTGGGTTGCCTATTTTCTTTTGTGTTGCCTGATGAGCAAGGAGATGCCCTATTTGCATTGAAAATGTCATTGAATGCTTCAAGTAACCAGCTTACGGACTGGAATCAAAATCAAGTGAACCCTTGTACTTGGTCACGTGTTTACTGTGACCAGAACTACAATGTCGTCCAAGTTTCACTAGCGATGATGGGATTCACAGGATACTTGACCCCAAGAATAGGAGCTCTAAAACATCTTGCAACTCTTTCTTTACAGGGGAATGGCATCACTGGTGATATACCAAAAGAGATAGGAAATCTGACAAGCTTGGTCAGGTTGGATTTAGAAAACAACAGATTAACTGGTGAAATACCGTCTTCCTTTGGTAATCTTAAAAGCCTTCAATTCTTGACATTGAGTCAAAACAATCTCGATGGGACTATACCTGGATCACTTGCCAGTCTCCCAAGCTTGATAAATGTTCTACTAGATTCAAATAATCTTAGTGGCCGAATTCCGGAGCATTTATTTGAACTTCCTAAATACAATTTCACTGGAAACAAGTTGAATTGTGGTGTGAATTATCTTCGACCTTGCGCATCTAATAATGCAGATCAAGGTTCATCACATAAACCAAAAATTGGCCTCATAGTTGGAATTATTGTAGGGTTAGTTGTTATCCTTTTTCTTGGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTTCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGCTAACTGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTGCGGTTGATTGGGTTTTGTACTACTCCAACTGAGCGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCAATTACGAGAACTCAAACCTTGGGAACCTGTTTTGGATTGGCCTACAAGAAAACGAGTGGCTCTGGGAACAGCCCAGGAAGATGATGTGCTATTGCTTGACCATGTCAAGAAATTAGAACGGGAGAAAAGACTAGAGGCTATTGTTGACCGCAACCTAAATAAAAATTACAACATGCAAGAGGTAGAAATGATGATACAAGTTGCATTACTCTGCACACAAGCAACGCCAGAGGACCGTCCATTGATGTCAGAGGTTGTAAGAATGCTAGAAGGAGAGGGGTTGGCTGAAAGGTGGGAAGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAGTATGAGAGATTACAAAGAAGATTTGACTGGGGAGAAGATTCAGTTTATAATCAAGATGCCATCGAGTTGTCTGGTTGGTGTACTGCAAGTCCTCAAACAATGATCGTTGTACATAAAGGTTGGATGCTGTCTGTGAATCACAAAATCTGCCTGGGACCTGCGAAGCTCGACAAAAGATACAAAGTGGTGTGA | 1644 | 0.4161 | MPVEMDFMFVLLLLLGCLFSFVLPDEQGDALFALKMSLNASSNQLTDWNQNQVNPCTWSRVYCDQNYNVVQVSLAMMGFTGYLTPRIGALKHLATLSLQGNGITGDIPKEIGNLTSLVRLDLENNRLTGEIPSSFGNLKSLQFLTLSQNNLDGTIPGSLASLPSLINVLLDSNNLSGRIPEHLFELPKYNFTGNKLNCGVNYLRPCASNNADQGSSHKPKIGLIVGIIVGLVVILFLGGLLFFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYQLRELKPWEPVLDWPTRKRVALGTAQEDDVLLLDHVKKLEREKRLEAIVDRNLNKNYNMQEVEMMIQVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGWCTASPQTMIVVHKGWMLSVNHKICLGPAKLDKRYKVV* | 548 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g00950 | 547 | CDD | TM_EGFR-like | 219 | 253 | - | - | |
Rops2g00950 | 547 | ProSiteProfiles | Protein kinase domain profile. | 288 | 547 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops2g00950 | 547 | Pfam | Leucine rich repeat N-terminal domain | 24 | 64 | IPR013210 | - | |
Rops2g00950 | 547 | SUPERFAMILY | Protein kinase-like (PK-like) | 268 | 397 | IPR011009 | - | |
Rops2g00950 | 547 | SUPERFAMILY | L domain-like | 27 | 196 | - | - | |
Rops2g00950 | 547 | ProSitePatterns | Protein kinases ATP-binding region signature. | 294 | 316 | IPR017441 | GO:0005524 | |
Rops2g00950 | 547 | Gene3D | Transferase(Phosphotransferase) domain 1 | 375 | 482 | - | - | |
Rops2g00950 | 547 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 412 | 473 | - | - | |
Rops2g00950 | 547 | FunFam | Somatic embryogenesis receptor kinase 1 | 257 | 364 | - | - | |
Rops2g00950 | 547 | Pfam | Protein tyrosine and serine/threonine kinase | 291 | 401 | IPR001245 | GO:0004672|GO:0006468 | |
Rops2g00950 | 547 | FunFam | Protein NSP-INTERACTING KINASE 2 | 396 | 482 | - | - | |
Rops2g00950 | 547 | Gene3D | Phosphorylase Kinase; domain 1 | 257 | 364 | - | - | |
Rops2g00950 | 547 | Gene3D | Ribonuclease Inhibitor | 24 | 221 | IPR032675 | - | |
Rops2g00950 | 547 | Pfam | Leucine rich repeat | 116 | 175 | IPR001611 | GO:0005515 | |
Rops2g00950 | 547 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 24 | 208 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g00950 | Rops-Chr2 | 13251558 | 13260883 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g00950 | 398 | 509 | Receptor kinase-like Gene Family | AT5G10290 | 83.929 | 4.77e-57 | 199 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Rops2g00950 | PK_Tyr_Ser-Thr | 1.4e-12 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g00950 | - | - | gmx:100793416 | 676.396 |