Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00949 ATGCAGAATCCCAGTGAAGAAATCCAAACCGAAACACAGGTAGCCATGGATTCCCTTCGTGTTCCCCTTTACAACCTCTCCGAACTCAGCACCCGAATGGATTCTCTTCAACGCTTCATTTCCCAATCCATCAACACCAACACTCCCCTCACCAACCAACACATGCACACCATCTCCAACGAGATCGTCTCCGCCATTCTCCACGTCATCATCAACGCCACCGCCCTCGTCGCCGAAACGGTTCCTCCGAAGCAGCCAACAACCTCGGACTCATCATCAAAATCCAAGGTTGTCGATGATTGCGAGATTGTGGAGTTGGACGCGGTAGAGCTTCTGGCTAAGCACTTCCACTACTGCGAGGTTTGCGGCAAAGGGTTCACACGCGACGCGAATCTTCGAATGCACATGCGGGCGCATGGTGATGAGTTTAAGACGCCAGAAGCGTTGGCGAAGAAGCGGTGTGGGGAAACGCGCTTTTCCGCGACGCGATTATTTTCTTGTCCTTTTGAGGGTTGTAAGCGGAACAAGCTGCATAAGAAGTTTAGGCCCTTGAAGTCGGTGTTGTGTTCGAGGAACCATTTCAAGAGAAGTCATTGCCCGAAAACGCACAGGTGCGATCGGTGTCGGAAGAAGAGTTTTGCGGTGCTTTCGGACTTGAAGAGCCACGTGAAGCAGTGCAGGGGAGAGTCCACGTGGAAGGTGTTCGAGGGGCATTCGCCGGCGACGGAAAAGGAAGGTGTGGATGGGATATTGACGAAGGGAAGTGACTGTTTGGATGAGTTACCTGAAGGTTTCTTTGATGATTTGGATTATTTTTTTGGGTTTGGCTCCATTCACAACAACTAG 846 0.5118 MQNPSEEIQTETQVAMDSLRVPLYNLSELSTRMDSLQRFISQSINTNTPLTNQHMHTISNEIVSAILHVIINATALVAETVPPKQPTTSDSSSKSKVVDDCEIVELDAVELLAKHFHYCEVCGKGFTRDANLRMHMRAHGDEFKTPEALAKKRCGETRFSATRLFSCPFEGCKRNKLHKKFRPLKSVLCSRNHFKRSHCPKTHRCDRCRKKSFAVLSDLKSHVKQCRGESTWKVFEGHSPATEKEGVDGILTKGSDCLDELPEGFFDDLDYFFGFGSIHNN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00949 281 FunFam B-cell CLL/lymphoma 6, member B 114 139 - -
Rops2g00949 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Rops2g00949 281 Gene3D Classic Zinc Finger 91 164 - -
Rops2g00949 281 Pfam Zinc-finger of C2H2 type 118 137 - -
Rops2g00949 281 SMART c2h2final6 117 139 IPR013087 -
Rops2g00949 281 SMART c2h2final6 203 224 IPR013087 -
Rops2g00949 281 SMART c2h2final6 165 198 IPR013087 -
Rops2g00949 281 SUPERFAMILY beta-beta-alpha zinc fingers 115 143 IPR036236 -
Rops2g00949 281 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Rops2g00949 281 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 11 85 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00949 Rops-Chr2 13241143 13241988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00949 79 232 C2H2 Transcription Factor Family AT5G22890 50.955 2.81e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g00949 zf-met 0.00034 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00949 - - gmx:100798348 329.717