Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00943 ATGGCTGAGACCAAGCGCTTCCTTCTCCCCAATCAATTGGATATCGAGCAGATTATTATAGAAGCACAGCATCGATGGCTACGTCCAGCTGAAATTTGTGAAATTCTCGGTAATTATAAAAAGTTCCGAATCACTCCAGAGCCTGCACATATGCCACCAAGTGGTTCACTTTTCCTATTCGATCGAAAGGTGCTGAGATACTTTAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACGGTGAGGGAAGCTCACGAGAGACTTAAGGCTGGAAGTGTGGATATGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTCCAAAGACGCACTTACTGGTTGCTTGAGGAGGAACTCTCACACATTGTTCTTGTACATTATCGGGAAGTGAAGGGAACCAAGGCAAATTTTAGATATCCCAAAGAAAATGAAGAATCTCTTCTTTATGCTCAACAAACTTACAAAATTATGCCCAATACGGAGATGGACACTTCTTTATCATCTAGTCTTCCTCCACATGGTTACCAGGATCCTTCACAAACTATAGATACAAGCATGAATAGTGCTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTCAATAACCATGCAAGTTCTGAGTTCTACTCTTTCCCTGAGCTGCAACACCCTGTTGTTGAGAAGATTAAAGCACAAACTGCTGATTCTTACTGTCCTCTGCCACTTAAAGATGAGCAAGAAAAGTTGCCTGTCGGTCCTGGGGTGAATTTTGTCCCACTCAGTCAAGCCAATGAAATCAAAGACATTCATAATGTTGGATTGACATATGAACCCCCAAAATTCCTTGGCTTTTCATCATGGGAAGATATCTTATATAATAATGCTGGAAGTCATCATGTTCCTTTTCAGCCTTCATTCCCTGAATCGCAATCCAATAACATGGGAATCAATAGCAATCCCTCTCAAGGAGATGAGATACTGGGGCAACATTTTATCATCAGCACTGCTAAACAGCATGAGAATGGAAGTATCATACAAGCTGATGGAAGTTGGCAGGCTCCTGGTTTTAATTCTTTAAACATACCCAATTGGCTCATAGATGGTGTATATTCAGGCTCGACTTGTGAGGTTAGTTATAGCAACTGTAAGCAGGAAGTTGATGAAGTTGATTTCCAAAAATCCATGGAACAGTGCCTTCTCCATCCACACAAACCAAACAAGGTTCTTATGCGAAATGACCCTCAAGAAAAGCTTTTAAAAGTAAAAGACAAGCTAAAATCAGATCTAGAGGCTAATAGAAGCCTGGATGAAATAGAAGACGTTTATCTCACTTCAAAGAAGACTCTGTTAGATGGATCTCCTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCGAACAAGCAATCCACTTCTGGTGCTTATTGGGATACTGTTGACAGTGAAAATGGGGTTGGCAGTGCAACCATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTATTTCCCATGACCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGGCATTTGAAGGTTCAGAAATCAAGGTTCTCATTTCAGGACGATTCTTAAGGAGTCAACAAGAATCACAACACTGTAAATGGTCATGCATGTTTGGTGAGCTAGAAGTGCCAGCAGAGATCATCGGGAATAGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAGGTGCGAGAATTTGATTTCCAGGTCAACTATACTCAAGAAGTCCACACTGCAGGTGAGAACAGGGGCAGCATTTTTGATAATTTTAGTATACGATTTGGAGAACTGTTGTCCCTCGGGCATGCCTTCCCTCAGAGTATACATTCATATAGTGTGAGTGAGAAATCTCAATTGAGAAGTAAAATCAGTTCTTTGCTGACGAGGGAAGATGATGATTGGGACAAGCTGCTGAAACTTACTCTAGAGAAAGATTTTTCTCCAGAAAGTTTACAGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTACTGGCTTGGCTCCTTCAGAAAATAACTGAAGAAGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCGGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAATTGCTGGTGTGAATGTTAACTTTCGTGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGGACAGTTGCTTCCCTCATCTCTCTCAACGCAGCACCTGGAGCACTCACTGATCCATGCCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGGCACAAAGGAATTGCAGGGTATCTTGCAGAATCTTTCCTAAGTTCACACCTCAAGTCTGTTGATTTGAACAGGGAAGTGGGAGAAAATTCAGGAGCAAAAGTAGTGGTACAAAAAAGAGTCCAAGAACAAAACAATGATGAGGGTCTGTCATATGAACTATCATGGAAAGATTCACTGGCTGCAGTGTGCAATGCCACACAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTGCAGTCGTTCCAGAGAAAACAAATGAAGGAACATGGTGATGACAAATTTGGAATATCTGATGAACACACTCTTTCACTGGTCAATGTGAAACCATACAAGTTTTTACAACGTTATGAGCCTGTCCATGCTGCTGCAACACGAATCCAGAACAAGTTCCGCAGTTGGAAAGGCAGAAAAGAATTTTTGATGATTCGACAACGGATCGTAAAAATTCAGGCTCACGTGAGAGGTCACCAAGTTAGGAAAAACTATGGGAATATAACTTGGTCGGTTGGAATATTGGAGAAGGTTATATTACGTTGGCGTAGAAAAGGTAGCGGTTTGCGGGGATTTAAATCAGAGGCTATTTCTGAAGGAACTATGGTACAAGCCACGGAGGATGACTATGATTTCTTAAAAGAAGGAAGGAAGCAAACTGAGGTAAGGTTGCAGAAAGCACTGGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTCCAATGTTGTAACTGAGATCCAAGAAAATCAGGAAAAGCATGATAGAATATTAAACAATTCAGAAGAAACAAGACAATTCGACATCCTCAGTGATCTTGAAGCATTGTTGGACGAAGATACTTTCATGCCTACAGCCTCTTAG 3309 0.4201 MAETKRFLLPNQLDIEQIIIEAQHRWLRPAEICEILGNYKKFRITPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDMLHCYYAHGEENENFQRRTYWLLEEELSHIVLVHYREVKGTKANFRYPKENEESLLYAQQTYKIMPNTEMDTSLSSSLPPHGYQDPSQTIDTSMNSAQASEYEEAESAFNNHASSEFYSFPELQHPVVEKIKAQTADSYCPLPLKDEQEKLPVGPGVNFVPLSQANEIKDIHNVGLTYEPPKFLGFSSWEDILYNNAGSHHVPFQPSFPESQSNNMGINSNPSQGDEILGQHFIISTAKQHENGSIIQADGSWQAPGFNSLNIPNWLIDGVYSGSTCEVSYSNCKQEVDEVDFQKSMEQCLLHPHKPNKVLMRNDPQEKLLKVKDKLKSDLEANRSLDEIEDVYLTSKKTLLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKQSTSGAYWDTVDSENGVGSATIPSQVHLDTYVLDPSISHDQLFSIIDYSPSWAFEGSEIKVLISGRFLRSQQESQHCKWSCMFGELEVPAEIIGNSVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNYTQEVHTAGENRGSIFDNFSIRFGELLSLGHAFPQSIHSYSVSEKSQLRSKISSLLTREDDDWDKLLKLTLEKDFSPESLQEQLLQNLLKDKLLAWLLQKITEEGKGPNVLDEGGQGVLHFAAALGYDWALEPTIIAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLNAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESFLSSHLKSVDLNREVGENSGAKVVVQKRVQEQNNDEGLSYELSWKDSLAAVCNATQAAARIHQVFRVQSFQRKQMKEHGDDKFGISDEHTLSLVNVKPYKFLQRYEPVHAAATRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNYGNITWSVGILEKVILRWRRKGSGLRGFKSEAISEGTMVQATEDDYDFLKEGRKQTEVRLQKALARVKSMVQYPEARDQYHRLSNVVTEIQENQEKHDRILNNSEETRQFDILSDLEALLDEDTFMPTAS* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00943 1102 SMART ANK_2a 760 789 IPR002110 GO:0005515
Rops2g00943 1102 SMART ANK_2a 799 828 IPR002110 GO:0005515
Rops2g00943 1102 FunFam Calmodulin-binding transcription activator 2 929 977 - -
Rops2g00943 1102 SUPERFAMILY E set domains 525 610 IPR014756 -
Rops2g00943 1102 Gene3D - 687 837 IPR036770 -
Rops2g00943 1102 Gene3D Immunoglobulins 518 614 IPR013783 -
Rops2g00943 1102 SMART iq_5 929 951 IPR000048 GO:0005515
Rops2g00943 1102 SMART iq_5 952 974 IPR000048 GO:0005515
Rops2g00943 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 979 IPR027417 -
Rops2g00943 1102 Pfam IPT/TIG domain 525 600 IPR002909 -
Rops2g00943 1102 FunFam Calmodulin-binding transcription activator 2 689 836 - -
Rops2g00943 1102 Pfam IQ calmodulin-binding motif 955 973 IPR000048 GO:0005515
Rops2g00943 1102 Pfam IQ calmodulin-binding motif 931 950 IPR000048 GO:0005515
Rops2g00943 1102 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1065 - -
Rops2g00943 1102 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Rops2g00943 1102 SUPERFAMILY Ankyrin repeat 712 822 IPR036770 -
Rops2g00943 1102 FunFam Calmodulin-binding transcription activator 2 518 614 - -
Rops2g00943 1102 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Rops2g00943 1102 ProSiteProfiles IQ motif profile. 931 959 IPR000048 GO:0005515
Rops2g00943 1102 Gene3D - 929 977 - -
Rops2g00943 1102 ProSiteProfiles IQ motif profile. 953 977 IPR000048 GO:0005515
Rops2g00943 1102 SMART CG_1_2 18 136 IPR005559 GO:0003677
Rops2g00943 1102 Pfam Ankyrin repeats (3 copies) 732 822 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00943 Rops-Chr2 13195417 13203139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00943 1 1083 CAMTA Transcription Factor Family AT5G64220 46.335 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops2g00943 CG-1 1.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00943 K21596 - gmx:100798875 1722.6