Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00922 ATGACGCAGCAGAATGTGGTAGTGCCTGAGACAAAATCTGGAATCAACAGAGCTATTACCGGTGCACAAAAGCCACCGGCGGCTCCTGTAGGGTACATTCCCATTCCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGACAAAGAATCAATGCATGGATTGATTCCATGAGAGCCTCCTCTCCAACCCATGTCAAATCAACTCCTTCGTTGGCTGAAGAACACAACGCTTGGATTCTTCGCCATCCATCAGCATTAGACATGTTTGAACAAATCATGGATGCCTCAAAGGGAAAACAAGTCGTCATGTTCCTTGACTACGATGGTACCTTGTCACCTATAGTCGATGACCCTGACCGTGCTTTCATGTCGGATTCGATGAGAAAAACTGTGAAGAAACTTGCAAGGTGTTTTCCTACTGCTATCGTTACCGGCAGATGCAGAGACAAGGTCTATAATTTTGTTCGTTTAGCAGAGCTATTTTATGCTGGAAGCCATGGTATGGATATTAAAGGGCCAACAAGAGACTCCAAATACTACAAAGACAACAAAGCAGAGGCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAACAATTGGTTGAGAAAACAAAATCAACTCCTGGTGCCCGGGTTGAGAATAACAAGTTTTGTGTCTCTGTTCATTTTCGCTGCGTTGATGAAAAGATATGGAGTGAACTGGCAAACCAAGTGAGATCAGTGTTAAAAGGGTACCCGAAGCTTCGTCTCAGTCAAGGAAGAAAGGTATTGGAGATTCGTCCCGCTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTGTTAGAGTCACTCGGATTTGCCAACTGTAACGATGTCTTTCCTGTATATATTGGTGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGTATTCTTGTCTCGAAATTTCCAAAGGACACAATTGCATCATACTCTTTACAAGAACCCAATGAGGTGATGGACTTTCTTCAACGTTTGGTGGAGTGGAAACAAGTATCCCTGCGAACACGTAGCCGTGTGTAA 1095 0.4329 MTQQNVVVPETKSGINRAITGAQKPPAAPVGYIPIPRRRVLKNLEINGGQRINAWIDSMRASSPTHVKSTPSLAEEHNAWILRHPSALDMFEQIMDASKGKQVVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVKKLARCFPTAIVTGRCRDKVYNFVRLAELFYAGSHGMDIKGPTRDSKYYKDNKAEAVLFQPASEFLPMIDEVYQQLVEKTKSTPGARVENNKFCVSVHFRCVDEKIWSELANQVRSVLKGYPKLRLSQGRKVLEIRPAIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTIASYSLQEPNEVMDFLQRLVEWKQVSLRTRSRV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00922 364 FunFam Trehalose 6-phosphate phosphatase 201 360 - -
Rops2g00922 364 FunFam Trehalose 6-phosphate phosphatase 103 190 - -
Rops2g00922 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 358 IPR044651 GO:0004805|GO:0005992
Rops2g00922 364 FunFam Trehalose 6-phosphate phosphatase 195 271 - -
Rops2g00922 364 NCBIfam HAD-IIB family hydrolase 105 316 IPR006379 -
Rops2g00922 364 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Rops2g00922 364 Gene3D - 103 192 IPR023214 -
Rops2g00922 364 Gene3D - 203 362 IPR023214 -
Rops2g00922 364 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Rops2g00922 364 CDD HAD_TPP 104 344 - -
Rops2g00922 364 SUPERFAMILY HAD-like 104 353 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00922 Rops-Chr2 12932855 12935748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00922 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.735 3.05e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00922 K01087 - gmx:100794430 643.654