Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00921 ATGGCAACAGCTATAGATATGTACAATAATAGCAACATCACATTCACACCGGATTTCATATATCCGTACAGTGAAGAGTTGATGAAAGCACTTGAACCTTTTATGAAAAGTGATTCATCTACCTCTTATTCCACCTCTTTCTCACCACAATCACACCCTTCTTCCATCATCTCTTATTCTCCGATTTCATCTAATTCTCTTCCCAATTTGCATCCCAACAATCTCTATTCCCACATGTACGATCAAAAGGGTCAAAGCCAAACCAGCTCCATCAAGCTCAACCAACTGACCCCATCACAAATTCTTCAGATTCAAGCTCAATTCCACATCAAGCAACAATCTTCACTCCAAAACCAACACGTGTCAAGCTTCCTCACCCCAAAACGAGTTCCCATGAAGCACGTTGGCACTGCCACGAAACCAACCAAACTCTACCGTGGGGTGAGACAACGGCATTGGGGAAAGTGGGTCGCTGAGATTAGACTTCCAAAGAACCGCACCCGTTTATGGCTTGGAACATTTGATACTGCAGAGGAAGCAGCTTTGGCTTATGATAACGCAGCATTTAAGCTTAGGGGTGAGTTTGCACGCCTTAATTTCCCTAATCTTCGCCACCAAGGAGCACGTGTTTTCGGTGAGTTTGGAGATTACAAGCCTCTACCTTCCTCGGTTGATTCCAAGCTTCAAGCTATTTGTGAAAGCTTAGCAATTTCACAGAAACAGGGGAACGTTGAAATGCCCTGCACCTCTGTTGAAGATATAAAGCCTCAGATACATGTTGTTCCTGAGTCTGACGTGGCACAATCGAAAAGTGAATTGGTTTGTCCAGAGTTTGAGGATTTTAAGGTGGAGGAGAAACCAACCGTGTCTGATGAATCTTCACCCTGTTCTTCTTCTCCTGAATCTGGTGTTACTTTCTTGGATTTCTTGGATTCTAATCAGTGGGATGAAACTGGGAATTTTGGGTTGGAGAAATTCCCTTCTCTGGAGATTGATTGGGCAGCTATATGA 1011 0.4362 MATAIDMYNNSNITFTPDFIYPYSEELMKALEPFMKSDSSTSYSTSFSPQSHPSSIISYSPISSNSLPNLHPNNLYSHMYDQKGQSQTSSIKLNQLTPSQILQIQAQFHIKQQSSLQNQHVSSFLTPKRVPMKHVGTATKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPNLRHQGARVFGEFGDYKPLPSSVDSKLQAICESLAISQKQGNVEMPCTSVEDIKPQIHVVPESDVAQSKSELVCPEFEDFKVEEKPTVSDESSPCSSSPESGVTFLDFLDSNQWDETGNFGLEKFPSLEIDWAAI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00921 336 CDD AP2 143 203 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 FunFam Ethylene-responsive transcription factor 2 143 202 - -
Rops2g00921 336 Pfam AP2 domain 145 194 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Rops2g00921 336 Gene3D AP2/ERF domain 144 202 IPR036955 GO:0003700|GO:0006355
Rops2g00921 336 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Rops2g00921 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00921 Rops-Chr2 12896605 12898369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00921 4 336 AP2-EREBP Transcription Factor Family AT4G39780 47.605 1.87e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g00921 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00921 K09286 - gmx:100818839 384.03