Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00901 ATGCATACTCGCTCTCTTAAGGAGGAGGCTTTGAATACTCTGGCGACTACACTGACTTGGAGGCTTGCTGCCAACAATGGCAGCACCCTTGGTTCCAATGATCTGGAAAGAAATGGTGATGGGAAGGCTCAAGACTCAGAGCCACCAACTCCCCACTCTGTTCTGAAGATGGGATTGAGAGAACGTAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCTCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTGCAAGAGAAAGAGTATTCTTTAAGGCAGTTATCGGAGCTGATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGATCAGGTTCTTTGAATGTGAAGATACAGGCAGCAACTGTATTGGGCTCCCTTTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTACTTGGAGGATGCATTCCTCCACTGCTTGGTCTACTGAAGTCCAGTTCTAATGAAGGGCAAATAGCTGCTGCAAAGACTATTTTTGCGGTTTCTCAAGGTGGTGCAAAAGATCACGTTGGTTCAAAAATTTTTTCAACTGAAGGAGTTGTGCCAGTGCTCTGGGAGCAGCTGAAAACTGGCCTGAAGACAGGAAATATAGTTGAAAGTTTATTGACAGGATCATTGAAAAATCTCTCCAGCAACACTGAGGGATTCTGGAGTGCAACAATACGAGCTGGAGGAGTGGACATATTACTGAAGTTATTGGCAACAGGACAACCTAGCTCTTTAGCTAATGTGTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGGTGACAAAACGACTCCTGAAACTCTTAGGCCCCGGTAATGATGACCCTGTTAGAGCTGAAGCAGCTGGTGCACTTAAATCTCTATCTTCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCCCAAGCATTACAGGAGGATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCCTATGTCATAACTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCAGCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCCCTTATGATATATGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTTGGTAGTTGAGCAGACATTACTCAAACAATTTAAACCTCGCTTGCCCTTCCTGGTACAGGAACGGACCATCGAAGCTCTAGCTAGTTTGTATGGCAATCCCATACTTTCAAGCAAACTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTAATAACAATGGCAGCCAATGAAGTGCAAGATGAGCTTATCAAAGCTCTCTTGACACTATGCAAAAGTGAAGGCAGTCTATGGCTTGCACTTCAGGGCCGTGAAGGAGTTCAGCTATTAATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCCGTTGCCCTGCTTTGCCTTCTATCTACTGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCAGGTGGTATACCTCCCCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCCGATGCTGGTCCTGCATTGTTGTGGTTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACCTTAAATCATTTAATTCATAAATCTGACACTACAACTATCAGTCAGCTTACAGCGTTGTTGACCAGTGATCTTCCTGATTCTAAGGTCTATGTTTTGGATGCTTTGAAAAGTATGCTTTCTGTTGCTCCTCTTAGTGACATTCTACGCGAAGGTAGTGCTGCCAGTGATGCATTTGATACTATGATAACATTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAGTCCGCATCAGCTCTGGCAGGAATTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCCGTTAAAACTCTTTGGTCAGCAATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTAATGGAGTCCTCATACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCTGCTGTTGCTAGAGATGCATTATCCCCCCTAGTTGCACTATCGAACTCTTCAGTTTTGCTAGTTGCAGAGAAGGCAACATGTGCTGTAGCAAATCTTATTTTGGATAGTGAAATTGCAGAGAAAGTTGTTGCAGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACATGAAGGCACAACTTCTGGAAAATCCCATGCTGCAGCAGCAATTGCTCGCCTCTTACAATCTCGGAAAGTTGATTATGCTGTTACTGATTGTGTGAATCGTGCTGGCACTGTCCTTGCATTGGTTTCTATTTTAGATTCTTCTGCTAATGGATCTGTTGCCACATCCGAGGCTCTAGAAGCACTTGCTATTCTGTCCAGGTCTGAAGAGACCGGTGCACATATCAAACCAGCATGTGCAATTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCCTGTGTATTGTTGATTCTACGCCAATGTTGCAAGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGACACTGTTGCTTCTACCTCTGGATGTATATCTTTAATAGCTAAGAGGATAATTAGTTCGGCAAATATAAAGGTCAAAATTGGGGGGGCTGCACTTCTTGTTTGTGCTGCAAAAGTAACTCACCAGAGACTGGTGGAGGATCTCAATTTATCAAACTTGTCTGCTAACCTTATTCACTCTCTAGTTGATATTCTTATTTCTGCCCAGCCTTCTTTGGATAATCAGGGTGATGACGACAAGGAACTCATAAGCATATGTAGGCATACAAAAGAAGAGGCCGATGGTTGTGAATCCAACTCTGGCACCTCCATTATATGTGGTGCTGACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAAGCTGGAGCAATCGATGTTCTCACTGACAGGATCTCAAATTGTTTCTCACAATATTCTCAGATTGACTACAAAGAAGATAACAACATGTGGATTTGTGCTTTATTGTTGGCGATATTATTTCAAGATAGAGATATCATACGGGCACATGCAACCATGAAAACTGTACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCGGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGTTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAAGCAATACCTGCCTTAGTTGATCTGCTCAAACCAATCCCAGATCGCCCAGGGGCACCATTTTTAGCTCTTGGGCTTTTGACTCAGCTTGGTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCTTAGAGGCACTTACGAAGTATCTTTCCCTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTACCAGTGCTGAGATACGAAAACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTGGGAGGAAGAGGTTCAAGATATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGACCACATTAGAAATGCAGAGATTGCTAGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTCAGAAAAGGAACAGCATGCTGCTATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCGCTTGCTGTTGCAGATGTTGAGATGAATGCAGTAGATGTTCTTTGTAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACTACGGCTGCTGCTCGCTGTGTTGAACCACTAGTCTCTCTCCTTGCAACTGAGTTTAGTCCTGCTCAACATTCAGCTGTCCGGGCATTGGACAGGCTTGTTGATGATGAGCAACTGGCCGAATTAGTTGCTGCACATGGTGCAGTTTTTCCTCTTGTGAGCTTACTGTCTGGTGGGAATTATGTACTTCATGAGGCCACTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAAACCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTGTTGAAAACATACTTGACATCTTACATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCTGCTGCTAAGGCTGTTGAACCCTTGTTTTTGTTGTTGACAAGACATGACCTTGGGCCTGATGGACAGCACAGTGCATTACAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTTCTGACCATTCACTGACTTCTCACCAAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATATACTTCTAGAAGAACACCTTCAAAAGGATCCAGTGACACAACAAGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGCATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTTGTTAGTATTGCACTAGCATGGCCAAATGAGATTGCCAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCCGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGTATTCTGCAATTTAGTTCAGAATTTTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCATAGTCATTGGTGCGTTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAAACGAAAGTTACTAAATCAGCTATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAACAGGCAAGATTATTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTGGTGATGTACAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTATATTGGATCTGATAGGTTCAAGTGATCCAGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTCTCAAATAATACCATTCAAGAGTACGCTTCTAGTGAAACAGTCAGAGCGATCACTGCCACTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCGGCAACACTTAGCATTCCCCACCTGGTTACATCCTTAAAAACAGGTTCAGAGGCTTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGTCCAGCTGAAGTTTCAAGGGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATTCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCTGGGACATTGGTGGTGATCATCAAACGTGGTAACAATATGAAGCAGTCAGTTGGAAACCCAAGCGTTTACTGCAAGCTTACACTCGGCAACACTCCTCCAAGGCTAACCAAGGTGGTCTCAACTGGCCCTAATCCAGAATGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGAGCAGTAGCTGGCGAATACACTTTGTTACCTGCAAGTAAAAGTGGCCCCCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAAACAAGTGATACAGTTTAG 6510 0.4303 MHTRSLKEEALNTLATTLTWRLAANNGSTLGSNDLERNGDGKAQDSEPPTPHSVLKMGLRERNSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSNEGQIAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLKTGLKTGNIVESLLTGSLKNLSSNTEGFWSATIRAGGVDILLKLLATGQPSSLANVCFLLASVMMEDASVCSKVLTAEVTKRLLKLLGPGNDDPVRAEAAGALKSLSSQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQEDAMCALANISGGLSYVITSLGQSLESCTSATQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSSKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWLALQGREGVQLLISLLGLSSEQQQECAVALLCLLSTENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAGPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALKSMLSVAPLSDILREGSAASDAFDTMITLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSYCLAAIFLSIKENKDVAAVARDALSPLVALSNSSVLLVAEKATCAVANLILDSEIAEKVVAEEVILPATRVLHEGTTSGKSHAAAAIARLLQSRKVDYAVTDCVNRAGTVLALVSILDSSANGSVATSEALEALAILSRSEETGAHIKPACAILAEFPKSISPIVLCIVDSTPMLQDKTIEILSRLCKDQPVVLGDTVASTSGCISLIAKRIISSANIKVKIGGAALLVCAAKVTHQRLVEDLNLSNLSANLIHSLVDILISAQPSLDNQGDDDKELISICRHTKEEADGCESNSGTSIICGADLAIWLLSILACHDEKNKIAIMEAGAIDVLTDRISNCFSQYSQIDYKEDNNMWICALLLAILFQDRDIIRAHATMKTVPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPSNKIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFTSAEIRKHESAFGAVTQLVAVLRLGGRGSRYSAAKALESLFSADHIRNAEIARQAVQPLVEILNTGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTTAAARCVEPLVSLLATEFSPAQHSAVRALDRLVDDEQLAELVAAHGAVFPLVSLLSGGNYVLHEATSRALVKLGKDKPACKMEMVKAGVVENILDILHEAPDYLCAAFAELLRILTNNATIAKGPSAAKAVEPLFLLLTRHDLGPDGQHSALQVLVNILEHPQCRSDHSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHILLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALAWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESIVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRLTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKTSDTV* 2170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00901 2169 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2043 2146 IPR035892 -
Rops2g00901 2169 Gene3D - 658 830 IPR011989 -
Rops2g00901 2169 Pfam Armadillo/beta-catenin-like repeat 117 147 IPR000225 GO:0005515
Rops2g00901 2169 Pfam Armadillo/beta-catenin-like repeat 538 577 IPR000225 GO:0005515
Rops2g00901 2169 Gene3D - 438 657 IPR011989 -
Rops2g00901 2169 MobiDBLite consensus disorder prediction 26 53 - -
Rops2g00901 2169 Gene3D C2 domain 2041 2168 IPR035892 -
Rops2g00901 2169 Pfam C2 domain 2043 2134 IPR000008 -
Rops2g00901 2169 FunFam Coatomer beta subunit 1629 2042 - -
Rops2g00901 2169 SUPERFAMILY ARM repeat 68 655 IPR016024 -
Rops2g00901 2169 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2043 2164 - -
Rops2g00901 2169 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 42 2164 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Rops2g00901 2169 Coils Coil 310 337 - -
Rops2g00901 2169 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1209 1253 IPR000225 GO:0005515
Rops2g00901 2169 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1393 1627 - -
Rops2g00901 2169 ProSiteProfiles C2 domain profile. 2024 2141 IPR000008 -
Rops2g00901 2169 SMART C2_3c 2044 2140 IPR000008 -
Rops2g00901 2169 SUPERFAMILY ARM repeat 1197 1581 IPR016024 -
Rops2g00901 2169 SUPERFAMILY ARM repeat 842 1172 IPR016024 -
Rops2g00901 2169 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Rops2g00901 2169 CDD C2 2045 2135 - -
Rops2g00901 2169 Gene3D - 1418 1709 IPR011989 -
Rops2g00901 2169 Gene3D - 1195 1417 IPR011989 -
Rops2g00901 2169 SMART arm_5 494 536 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1870 1910 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 580 620 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1242 1283 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1579 1620 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1743 1782 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 538 578 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1197 1240 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 324 373 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1411 1451 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1452 1492 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 281 322 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1325 1365 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 1494 1534 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 107 148 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 149 189 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 830 872 IPR000225 GO:0005515
Rops2g00901 2169 SMART arm_5 746 784 IPR000225 GO:0005515
Rops2g00901 2169 SUPERFAMILY ARM repeat 629 941 IPR016024 -
Rops2g00901 2169 Gene3D - 1833 2039 IPR011989 -
Rops2g00901 2169 Gene3D - 1713 1832 IPR011989 -
Rops2g00901 2169 Gene3D - 831 1194 IPR011989 -
Rops2g00901 2169 Gene3D - 61 430 IPR011989 -
Rops2g00901 2169 SUPERFAMILY ARM repeat 1690 2041 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00901 Rops-Chr2 12689646 12701774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00901 511 633 U-box Gene Family AT2G23140 42.742 4.47e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00901 - - cam:101494820 3711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00901 2 12689646 12701774 Rops2g00901 2 12689646 12701774 ECH
Rops2g00901 2 12689646 12701774 Rops11g03863 11 72529122 72539526 PCT