Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00895 ATGAAGGCTCTCTCTGAGCTCTTCTACCAGCTTTATTGCAAGACAATAGTCCTATTGACATACATGCTAATAGAACTTATCCTCATCATTCGGTACCTAAAGTCAGATACACGTCCAATTACCACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAACTCGCTATACCAGAAGATTGAAGGCAAAGCACTTAGACTGCAGGGTGTGCTTATCTGAATTTGAAGAAGGGGAAGTGGTGAGGCACTTGAACTGTGAACACACATTTCACAAGGATTGTTTGGACAAGTGGTTCTTGCAGGAAGAATTTTATGCTACATGCCCACTTTGCAGGAACAAAGTGTTGCCAGATGATGTTGTGGCCAAGTATCACTTGCTTCAAAATCAGGTAGAATATGAGGGTAATGATGATCAGCTTGTTGTTTTGTTATCTGCATTACGGGGTGGTAGCACTTTGCACAGATATCTCTGA 477 0.4193 MKALSELFYQLYCKTIVLLTYMLIELILIIRYLKSDTRPITTTQYLNFIEEKNPTTRYTRRLKAKHLDCRVCLSEFEEGEVVRHLNCEHTFHKDCLDKWFLQEEFYATCPLCRNKVLPDDVVAKYHLLQNQVEYEGNDDQLVVLLSALRGGSTLHRYL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00895 158 SUPERFAMILY RING/U-box 48 119 - -
Rops2g00895 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 118 IPR013083 -
Rops2g00895 158 ProSiteProfiles Zinc finger RING-type profile. 69 113 IPR001841 -
Rops2g00895 158 SMART ring_2 69 112 IPR001841 -
Rops2g00895 158 PANTHER - 1 153 - -
Rops2g00895 158 Pfam Ring finger domain 68 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00895 Rops-Chr2 12623375 12623997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00895 68 124 C3H Transcription Factor Family AT1G15100 56.140 1.66e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00895 K16282 - gmx:102669811 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00895 2 12623375 12623997 Rops2g00895 2 12623375 12623997 ECH
Rops2g00895 2 12623375 12623997 Rops11g03868 11 72631711 72632411 PCT