Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00891 ATGGATTCTCCATCCTCGCAGTTTGTTTCCTCAAGAAAGATTGGTGTATATGATCCTATCCAACAAATTACTATGTGGGAAGAAAACTTCAATGATGGTAATTTAAGTGGATCCATGTCCTTAATTGAGGAAGCGGACACGAAGTTAGATAATCAGGTTCAGTCAAAGGATGCTTCACATGGAATCTTGGCAACATCTACGAAGTATGACCAAGAAGCCAACAAACTTACTGATAAGATACAAAGACGTCTTGCGCAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTGAGGAAAAAGGCCTATGTGCAGAAGTTAGAATCATGTCGTTTGAAGTTGATACAGTTAGAGCTAGAGGCAGATCATGCCAGACAACAGGGATTGTATATTGGTGGTGGATTGGGTTCTATTAATTTGGGTTTTGCTGGCACTGTAAATTCAGGAATAACAACTTTTAAGATGGAGTATGAACACTGGGTGGAAGAGCAAAATAGACAAATATTGGAACTGAGAAGTGCTTTAAGTGCTCACACCGATGACATACAGCTCGGGACACTTGTAAATGGCATCATGAACCACTATTGCAAACTCTTTTGCATGAAATCTGAAGCTGCAAAAACAGATGTTTTCTATGTCACATCTGGTTTGTGGAAAACAGCAGCTGAACGATTTTTCTTGTGGATTGGAGGTTTTCGCCCCTCTGAACTTCTAAAGGTTCTTGTCCCTTTGATTGAACCATTGACAGAGCAACAACGGTTTGATGCCTGTAACCTGGAAAAATCATGCCTGCAAGCAGAAGATGCCCTTTCACAAGGTATGGATAAACTCCAGCAAATACTTACTGAAATTGTAGCAGCTGGACAACTTGTTGAAGGGTCTTACATTCCACACATGGCTATTGCAATGGAGAGGCTAGAAGCTCTGGTGTGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACCTTGCTGCAAATGACTCGAATACTTACCATACGTCAAACTGCTACATGGCTGCTTGCTTTGGGGGAATATTTTCAACGCCTGCGAGCTTTGAGTAAACTTTGGGCCAATCGTCATCGTGAACCCGCTTAG 1092 0.4203 MDSPSSQFVSSRKIGVYDPIQQITMWEENFNDGNLSGSMSLIEEADTKLDNQVQSKDASHGILATSTKYDQEANKLTDKIQRRLAQNREAARKSRLRKKAYVQKLESCRLKLIQLELEADHARQQGLYIGGGLGSINLGFAGTVNSGITTFKMEYEHWVEEQNRQILELRSALSAHTDDIQLGTLVNGIMNHYCKLFCMKSEAAKTDVFYVTSGLWKTAAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRFDACNLEKSCLQAEDALSQGMDKLQQILTEIVAAGQLVEGSYIPHMAIAMERLEALVCFVNQADHLRQETLLQMTRILTIRQTATWLLALGEYFQRLRALSKLWANRHREPA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00891 363 FunFam BZIP family transcription factor 78 127 - -
Rops2g00891 363 Coils Coil 105 125 - -
Rops2g00891 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Rops2g00891 363 Gene3D - 78 127 - -
Rops2g00891 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Rops2g00891 363 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
Rops2g00891 363 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Rops2g00891 363 SUPERFAMILY Leucine zipper domain 79 107 IPR046347 GO:0003700|GO:0006355
Rops2g00891 363 Pfam bZIP transcription factor 78 107 IPR004827 GO:0003700|GO:0006355
Rops2g00891 363 Coils Coil 159 179 - -
Rops2g00891 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00891 Rops-Chr2 12528417 12536544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00891 1 362 Calmodulin-binding Proteins AT5G65210 63.587 1.05e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops2g00891 DOG1 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00891 K14431 - gmx:100780003 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00891 2 12528417 12536544 Rops2g00891 2 12528417 12536544 ECH
Rops2g00891 2 12528417 12536544 Rops11g03870 11 72660175 72668008 PCT